UHGV-0055379

Genome information

Genome length 44,436 bps

CDS count 77

Completeness 85.23% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055379
vOTU ID	vOTU-025725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_38021
BioSample	SAMEA2157977
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.25
Jumbo phage	No

Genome content
Genome length	44,436 bps
GC content	49.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	88.51%
Average CDS length	514.95 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055379_1	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0055379_1	PHROG	phrog_9562	NA	unknown function
UHGV-0055379_1	UniRef90	UniRef90_A0A1C5W9L2	Type III effector pipB2	NA
UHGV-0055379_1	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0055379_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0055379_1	Pfam	PF19062	NA	DUF5758
UHGV-0055379_1	COG	COG1357	NA	NA
UHGV-0055379_1	Structural annotation	PF19062	NA	NA
UHGV-0055379_2	PHROG	phrog_25245	NA	unknown function
UHGV-0055379_2	UniRef90	UniRef90_U2QJB7	3D domain protein	NA
UHGV-0055379_2	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0055379_2	Pfam	PF06725	3D domain	3D
UHGV-0055379_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0055379_2	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0055379_5	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0055379_5	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0055379_5	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0055379_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0055379_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0055379_6	PHROG	phrog_18107	NA	unknown function
UHGV-0055379_6	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0055379_6	Structural annotation	PF05037	NA	NA
UHGV-0055379_7	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0055379_7	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0055379_7	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0055379_7	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0055379_7	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0055379_7	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0055379_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0055379_8	PHROG	phrog_11992	NA	unknown function
UHGV-0055379_8	UniRef90	UniRef90_A0A810QG37	ZnF_CHCC domain-containing protein	NA
UHGV-0055379_8	eggNOG-mapper	1007096.BAGW01000023_gene150	CHC2 zinc finger	NA
UHGV-0055379_8	PADLOC	drt-cluster192	DRT	DRT
UHGV-0055379_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0055379_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0055379_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0055379_9	UniRef90	UniRef90_UPI0016512652	NA	NA
UHGV-0055379_9	eggNOG-mapper	903814.ELI_3221	NA	NA
UHGV-0055379_9	Pfam	PF06048	NA	DUF927
UHGV-0055379_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0055379_9	COG	COG5519	NA	NA
UHGV-0055379_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0055379_11	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0055379_11	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0055379_11	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0055379_11	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0055379_11	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0055379_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0055379_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0055379_12	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0055379_12	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0055379_12	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0055379_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0055379_12	COG	COG0863	DNA modification methylase	NA
UHGV-0055379_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0055379_14	PHROG	phrog_10714	NA	unknown function
UHGV-0055379_14	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0055379_14	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0055379_14	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0055379_16	PHROG	phrog_25732	NA	unknown function
UHGV-0055379_16	Structural annotation	NF011227	NA	NA
UHGV-0055379_17	Structural annotation	NF000937	NA	NA
UHGV-0055379_19	PHROG	phrog_37865	NA	unknown function
UHGV-0055379_22	UniRef90	UniRef90_A0A4R4CZG5	N-acetyltransferase domain-containing protein	NA
UHGV-0055379_22	eggNOG-mapper	693746.OBV_25300	-acetyltransferase	NA
UHGV-0055379_22	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0055379_22	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0055379_24	PHROG	phrog_22543	NA	unknown function
UHGV-0055379_27	PHROG	phrog_8684	NA	unknown function
UHGV-0055379_27	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-0055379_27	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0055379_27	Pfam	PF09643	YopX protein	YopX
UHGV-0055379_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0055379_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0055379_28	UniRef90	UniRef90_A0A1C5WAG7	Restriction alleviation protein, Lar family	NA
UHGV-0055379_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0055379_28	Structural annotation	PF14354	NA	NA
UHGV-0055379_30	PHROG	phrog_25385	NA	unknown function
UHGV-0055379_30	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0055379_33	PHROG	phrog_12588	NA	unknown function
UHGV-0055379_34	UniRef90	UniRef90_A0A0F0C267	HTH cro/C1-type domain-containing protein	NA
UHGV-0055379_34	Structural annotation	PF16677	NA	NA
UHGV-0055379_35	UniRef90	UniRef90_UPI001959AABF	Lar family restriction alleviation protein	NA
UHGV-0055379_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055379_42	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055379_42	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0055379_42	Structural annotation	PF10013, COG4338	NA	NA
UHGV-0055379_43	UniRef90	UniRef90_A0A810QB23	NA	NA
UHGV-0055379_43	Pfam	PF04448	NA	DUF551
UHGV-0055379_43	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0055379_44	UniRef90	UniRef90_A0A3D5L5C3	Cytochrome C	NA
UHGV-0055379_44	eggNOG-mapper	1200567.JNKD01000039_gene220	NA	NA
UHGV-0055379_45	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0055379_45	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0055379_45	UniRef90	UniRef90_A0A1C5WBR5	RNA-splicing ligase RtcB	NA
UHGV-0055379_45	eggNOG-mapper	1232443.BAIA02000103_gene2968	tRNA-splicing ligase RtcB	NA
UHGV-0055379_45	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0055379_45	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0055379_45	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0055379_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0055379_47	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0055379_47	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0055379_47	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0055379_47	COG	COG5410	NA	NA
UHGV-0055379_47	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0055379_49	Structural annotation	COG4416	NA	NA
UHGV-0055379_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0055379_50	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0055379_50	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0055379_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0055379_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0055379_51	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0055379_51	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0055379_51	COG	COG2369	NA	NA
UHGV-0055379_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0055379_52	PHROG	phrog_6072	NA	unknown function
UHGV-0055379_54	PHROG	phrog_909	major head protein	head and packaging
UHGV-0055379_55	PHROG	phrog_29	major head protein	head and packaging
UHGV-0055379_55	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0055379_55	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0055379_55	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0055379_55	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0055379_56	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0055379_58	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-0055379_58	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0055379_58	Structural annotation	TIGR01560	NA	NA
UHGV-0055379_59	PHROG	phrog_1233	NA	unknown function
UHGV-0055379_59	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0055379_60	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0055379_60	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0055379_60	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0055379_60	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0055379_61	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0055379_62	PHROG	phrog_158	major tail protein	tail
UHGV-0055379_62	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0055379_62	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0055379_63	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-0055379_63	Pfam	PF16478	NA	DUF5055
UHGV-0055379_63	Structural annotation	PF16478	NA	NA
UHGV-0055379_66	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0055379_66	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0055379_66	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0055379_66	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0055379_67	PHROG	phrog_1194	NA	unknown function
UHGV-0055379_67	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0055379_67	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0055379_68	PHROG	phrog_32744	NA	unknown function
UHGV-0055379_68	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0055379_68	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0055379_69	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0055379_69	Structural annotation	PF18459	NA	NA
UHGV-0055379_70	PHROG	phrog_4628	tail fiber assembly	tail
UHGV-0055379_70	UniRef90	UniRef90_UPI001D005220	toxin-antitoxin system toxin subunit	NA
UHGV-0055379_70	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0055379_71	PHROG	phrog_2310	NA	unknown function
UHGV-0055379_71	eggNOG-mapper	756499.Desde_1351	NA	NA
UHGV-0055379_72	PHROG	phrog_937	hemolysin	other
UHGV-0055379_72	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0055379_74	PHROG	phrog_1129	holin	lysis
UHGV-0055379_74	UniRef90	UniRef90_UPI001C0F421C	phage holin family protein	NA
UHGV-0055379_74	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0055379_74	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0055379_74	Structural annotation	PF06946	NA	NA
UHGV-0055379_75	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0055379_75	PHROG	phrog_670	endolysin	lysis
UHGV-0055379_75	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055379_75	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0055379_75	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0055379_75	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0055379_75	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0055379_76	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0055379_76	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0055379_77	PHROG	phrog_7929	NA	unknown function
UHGV-0055379_77	UniRef90	UniRef90_UPI001D013B08	NYN domain-containing protein	NA
UHGV-0055379_77	eggNOG-mapper	663278.Ethha_1443	NYN domain	NA
UHGV-0055379_77	Pfam	PF01936	NYN domain	NYN
UHGV-0055379_77	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0055379_77	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA