UHGV-0055422

Genome information

Genome length 15,026 bps

CDS count 17

Completeness 61.76% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055422
vOTU ID	vOTU-030729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32579
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.81
Jumbo phage	No

Genome content
Genome length	15,026 bps
GC content	37.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	91.38%
Average CDS length	808.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055422_1	KOfam	K21575	susA; neopullulanase [EC:3.2.1.135]	NA
UHGV-0055422_1	UniRef90	UniRef90_J9FZ29	Glycoside hydrolase family alpha-glucosidase (Fragment)	NA
UHGV-0055422_1	eggNOG-mapper	1121098.HMPREF1534_02831	Belongs to the glycosyl hydrolase 13 family	NA
UHGV-0055422_1	Pfam	PF10438	Cyclo-malto-dextrinase C-terminal domain	Cyc-maltodext_C
UHGV-0055422_1	COG	COG0366	Glycosidase/amylase (phosphorylase)	NA
UHGV-0055422_3	Structural annotation	PF17548	NA	NA
UHGV-0055422_4	Structural annotation	PF17427	NA	NA
UHGV-0055422_6	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0055422_6	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0055422_6	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0055422_6	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0055422_6	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0055422_6	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0055422_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0055422_7	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0055422_7	eggNOG-mapper	1094755.MCO_01569	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0055422_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0055422_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0055422_9	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0055422_9	PHROG	phrog_1015	tail protein with lysin activity	tail
UHGV-0055422_9	UniRef90	UniRef90_A0A084JHW9	Cell wall-binding protein	NA
UHGV-0055422_9	eggNOG-mapper	1304866.K413DRAFT_1245	Putative cell wall binding repeat	NA
UHGV-0055422_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0055422_9	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0055422_10	PHROG	phrog_11037	NA	unknown function
UHGV-0055422_10	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0055422_10	eggNOG-mapper	1071073.KI530536_gene1254	Lysin motif	NA
UHGV-0055422_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0055422_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0055422_10	COG	COG1388	LysM repeat	NA
UHGV-0055422_10	Structural annotation	PF18013	NA	NA
UHGV-0055422_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0055422_12	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0055422_12	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0055422_12	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0055422_12	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0055422_13	PHROG	phrog_2248	tail protein	tail
UHGV-0055422_13	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0055422_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0055422_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0055422_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0055422_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0055422_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0055422_14	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0055422_14	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0055422_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0055422_14	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0055422_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0055422_15	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0055422_15	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0055422_17	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0055422_17	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0055422_17	eggNOG-mapper	86416.Clopa_2555	lipolytic protein G-D-S-L family	NA
UHGV-0055422_17	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0055422_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0055422_17	Structural annotation	PF14606, NF007819, COG2755	NA	NA