UHGV-0055503

Genome information

Genome length 16,511 bps

CDS count 18

Completeness 85.27% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055503
vOTU ID	vOTU-034570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52452
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.97
Jumbo phage	No

Genome content
Genome length	16,511 bps
GC content	35.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	90.96%
Average CDS length	834.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055503_1	COG	COG5434	Polygalacturonase	NA
UHGV-0055503_1	Structural annotation	PF12708, PF14606, NF007819, TIGR03808, COG5434	NA	NA
UHGV-0055503_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0055503_2	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-0055503_2	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0055503_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0055503_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0055503_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0055503_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0055503_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0055503_4	PHROG	phrog_2248	tail protein	tail
UHGV-0055503_4	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0055503_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0055503_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0055503_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0055503_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0055503_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0055503_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0055503_5	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0055503_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0055503_7	PHROG	phrog_11037	NA	unknown function
UHGV-0055503_7	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0055503_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0055503_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0055503_7	Structural annotation	PF18013	NA	NA
UHGV-0055503_8	PHROG	phrog_14030	NA	unknown function
UHGV-0055503_8	UniRef90	UniRef90_U2W578	Cpl-7 lysozyme protein	NA
UHGV-0055503_8	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0055503_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0055503_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0055503_8	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0055503_9	PHROG	phrog_199	holin	lysis
UHGV-0055503_9	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0055503_9	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0055503_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0055503_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0055503_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0055503_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0055503_10	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0055503_10	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0055503_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0055503_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0055503_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0055503_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0055503_11	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0055503_11	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0055503_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0055503_11	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0055503_13	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0055503_13	Structural annotation	PF17427	NA	NA
UHGV-0055503_14	Structural annotation	PF17548	NA	NA
UHGV-0055503_15	Structural annotation	PF07865	NA	NA
UHGV-0055503_16	Structural annotation	PF17548	NA	NA