UHGV-0055538

Genome information

Genome length 47,452 bps

CDS count 75

Completeness 81.63% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055538
vOTU ID	vOTU-037035
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_50724
BioSample	SAMEA2152443
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.04
Jumbo phage	No

Genome content
Genome length	47,452 bps
GC content	39.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	93.15%
Average CDS length	592.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055538_1	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0055538_1	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0055538_1	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0055538_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0055538_2	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0055538_2	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0055538_2	COG	COG5410	NA	NA
UHGV-0055538_2	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0055538_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0055538_3	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0055538_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0055538_3	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0055538_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0055538_4	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0055538_4	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0055538_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0055538_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0055538_5	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0055538_5	UniRef90	UniRef90_R9KPS9	Phage_Mu_F domain-containing protein	NA
UHGV-0055538_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0055538_5	COG	COG2369	NA	NA
UHGV-0055538_5	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0055538_7	PHROG	phrog_544	major head protein	head and packaging
UHGV-0055538_7	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0055538_7	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0055538_7	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0055538_8	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0055538_8	UniRef90	UniRef90_A7YGU7	Rho_N domain-containing protein	NA
UHGV-0055538_8	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-0055538_8	Structural annotation	PF07498	NA	NA
UHGV-0055538_9	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0055538_10	PHROG	phrog_4105	NA	unknown function
UHGV-0055538_10	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0055538_11	PHROG	phrog_18218	NA	unknown function
UHGV-0055538_11	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0055538_11	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0055538_11	Structural annotation	PF06946	NA	NA
UHGV-0055538_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0055538_13	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0055538_13	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0055538_13	AcrCatalog	cluster_24841	NA	NA
UHGV-0055538_13	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0055538_14	Structural annotation	PF05657	NA	NA
UHGV-0055538_15	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0055538_15	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0055538_16	PHROG	phrog_36112	NA	unknown function
UHGV-0055538_16	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0055538_16	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0055538_16	Structural annotation	PF16478	NA	NA
UHGV-0055538_18	PHROG	phrog_28918	NA	unknown function
UHGV-0055538_18	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0055538_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0055538_19	PHROG	phrog_1194	NA	unknown function
UHGV-0055538_19	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0055538_19	Pfam	PF20458	NA	DUF6711
UHGV-0055538_19	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0055538_20	PHROG	phrog_18190	NA	unknown function
UHGV-0055538_20	UniRef90	UniRef90_A0A416L7Z5	Tail fiber domain-containing protein	NA
UHGV-0055538_20	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0055538_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0055538_20	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0055538_21	PHROG	phrog_17196	kinase	other
UHGV-0055538_21	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0055538_21	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0055538_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0055538_23	PHROG	phrog_1493	endolysin	lysis
UHGV-0055538_23	UniRef90	UniRef90_A0A416AFQ9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055538_23	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0055538_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0055538_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0055538_23	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0055538_23	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0055538_24	PHROG	phrog_26308	NA	unknown function
UHGV-0055538_24	eggNOG-mapper	445973.CLOBAR_01976	NA	NA
UHGV-0055538_24	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-0055538_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0055538_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0055538_25	UniRef90	UniRef90_A0A1Q6KAD1	HTH cro/C1-type domain-containing protein	NA
UHGV-0055538_25	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055538_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055538_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055538_25	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0055538_26	UniRef90	UniRef90_A0A1Q6KAH5	NA	NA
UHGV-0055538_26	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0055538_26	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0055538_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0055538_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0055538_29	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0055538_29	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0055538_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0055538_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0055538_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0055538_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0055538_30	PHROG	phrog_4433	NA	unknown function
UHGV-0055538_30	UniRef90	UniRef90_A0A1C6I166	Collagen triple helix repeat (20 copies)	NA
UHGV-0055538_30	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0055538_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0055538_31	PHROG	phrog_4292	NA	unknown function
UHGV-0055538_31	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0055538_33	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0055538_33	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055538_33	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0055538_33	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0055538_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0055538_33	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0055538_35	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0055538_35	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0055538_35	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0055538_35	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0055538_36	PHROG	phrog_32498	NA	unknown function
UHGV-0055538_36	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0055538_37	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0055538_37	eggNOG-mapper	1304866.K413DRAFT_4695	NA	NA
UHGV-0055538_37	Structural annotation	NF010673	NA	NA
UHGV-0055538_38	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055538_38	UniRef90	UniRef90_UPI001D013072	HNH endonuclease	NA
UHGV-0055538_38	eggNOG-mapper	1298920.KI911353_gene4861	HNH endonuclease	NA
UHGV-0055538_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0055538_38	Structural annotation	PF13392	NA	NA
UHGV-0055538_39	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0055538_39	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0055538_39	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0055538_39	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0055538_39	dbAPIS	APIS058	NA	NA
UHGV-0055538_39	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0055538_39	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0055538_40	PHROG	phrog_7839	NA	unknown function
UHGV-0055538_40	UniRef90	UniRef90_A0A413HUB9	NA	NA
UHGV-0055538_40	eggNOG-mapper	1410650.JHWL01000003_gene2844	NA	NA
UHGV-0055538_41	Pfam	PF09643	YopX protein	YopX
UHGV-0055538_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0055538_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0055538_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0055538_42	UniRef90	UniRef90_A0A373Z0M6	Single-stranded DNA-binding protein	NA
UHGV-0055538_42	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0055538_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0055538_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0055538_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0055538_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0055538_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0055538_44	PHROG	phrog_19106	NA	unknown function
UHGV-0055538_44	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0055538_44	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0055538_44	Structural annotation	TIGR01453	NA	NA
UHGV-0055538_45	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0055538_49	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0055538_49	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0055538_49	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-0055538_49	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0055538_49	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0055538_49	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0055538_49	COG	COG0863	DNA modification methylase	NA
UHGV-0055538_49	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0055538_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0055538_50	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0055538_50	UniRef90	UniRef90_UPI001BC3B448	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0055538_50	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0055538_50	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0055538_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0055538_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0055538_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0055538_52	PHROG	phrog_17284	NA	unknown function
UHGV-0055538_52	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0055538_52	eggNOG-mapper	562981.HMPREF0428_01833	C-5 cytosine-specific DNA methylase	NA
UHGV-0055538_52	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0055538_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0055538_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0055538_54	PHROG	phrog_17690	NA	unknown function
UHGV-0055538_54	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0055538_54	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0055538_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0055538_55	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0055538_55	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0055538_55	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0055538_55	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0055538_58	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0055538_58	UniRef90	UniRef90_UPI001E517B3D	helix-turn-helix domain-containing protein	NA
UHGV-0055538_58	eggNOG-mapper	1121947.AUHK01000002_gene919	DnaD domain protein	NA
UHGV-0055538_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0055538_58	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-0055538_61	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055538_61	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0055538_61	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0055538_61	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0055538_61	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0055538_61	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0055538_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055538_63	PHROG	phrog_8684	NA	unknown function
UHGV-0055538_63	UniRef90	UniRef90_A0A396G7S7	YopX domain-containing protein	NA
UHGV-0055538_63	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0055538_63	Pfam	PF09643	YopX protein	YopX
UHGV-0055538_63	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0055538_64	PHROG	phrog_874	NA	unknown function
UHGV-0055538_64	UniRef90	UniRef90_UPI000CDA362A	ASCH domain-containing protein	NA
UHGV-0055538_64	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0055538_64	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0055538_66	PHROG	phrog_10714	NA	unknown function
UHGV-0055538_66	UniRef90	UniRef90_R5GX78	DNA polymerase II large subunit	NA
UHGV-0055538_66	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0055538_67	PHROG	phrog_20593	NA	unknown function
UHGV-0055538_69	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0055538_69	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0055538_69	UniRef90	UniRef90_UPI00189B8515	ATP-binding protein	NA
UHGV-0055538_69	eggNOG-mapper	1304880.JAGB01000002_gene2233	PFAM IstB-like ATP binding protein	NA
UHGV-0055538_69	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0055538_69	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0055538_69	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0055538_70	PHROG	phrog_1578	NA	unknown function
UHGV-0055538_70	eggNOG-mapper	867696.E1XTF6_BPSAV	NA	NA
UHGV-0055538_72	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0055538_72	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0055538_72	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0055538_74	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0055538_74	PHROG	phrog_95	integrase	integration and excision
UHGV-0055538_74	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0055538_74	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0055538_74	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0055538_74	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0055538_74	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0055538_74	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0055538_75	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0055538_75	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0055538_75	UniRef90	UniRef90_A0A1C5S3W3	Stage II sporulation protein AC	NA
UHGV-0055538_75	eggNOG-mapper	411474.COPEUT_01315	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0055538_75	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0055538_75	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0055538_75	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0055538_75	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0055538_75	Structural annotation	PF04542, MF_04164, TIGR02846	NA	NA