UHGV-0055566

Genome information

Genome length 33,832 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055566
vOTU ID	vOTU-008530
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51086
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.96
Jumbo phage	No

Genome content
Genome length	33,832 bps
GC content	43.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.90%
Average CDS length	679.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055566_1	PHROG	phrog_1129	holin	lysis
UHGV-0055566_1	UniRef90	UniRef90_A0A416AFW1	Enolase	NA
UHGV-0055566_1	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0055566_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0055566_1	Structural annotation	PF06946	NA	NA
UHGV-0055566_2	KOfam	K02234	cobW; cobalamin biosynthesis protein CobW	NA
UHGV-0055566_2	UniRef90	UniRef90_R5NS11	CobW/P47K family protein	NA
UHGV-0055566_2	eggNOG-mapper	411489.CLOL250_01912	NA	NA
UHGV-0055566_2	Pfam	PF02492	CobW/HypB/UreG, nucleotide-binding domain	cobW
UHGV-0055566_2	COG	COG0523	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	NA
UHGV-0055566_3	PHROG	phrog_19291	NA	unknown function
UHGV-0055566_3	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0055566_3	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0055566_4	PHROG	phrog_23052	NA	unknown function
UHGV-0055566_4	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-0055566_4	Structural annotation	PF14879, PF05113, NF033848, NF033147, COG3500, COG4935	NA	NA
UHGV-0055566_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0055566_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0055566_6	UniRef90	UniRef90_A0A373ZD47	Phage tail tape measure protein	NA
UHGV-0055566_6	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0055566_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0055566_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0055566_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0055566_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0055566_7	PHROG	phrog_709	NA	unknown function
UHGV-0055566_7	Structural annotation	PF11836	NA	NA
UHGV-0055566_8	PHROG	phrog_88	major tail protein	tail
UHGV-0055566_8	UniRef90	UniRef90_A0A373ZCY5	Phage tail protein	NA
UHGV-0055566_8	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-0055566_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0055566_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0055566_9	PHROG	phrog_78	tail terminator	connector
UHGV-0055566_9	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0055566_9	Structural annotation	PF20765	NA	NA
UHGV-0055566_10	UniRef90	UniRef90_UPI00189E13A9	HK97 gp10 family phage protein	NA
UHGV-0055566_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0055566_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0055566_11	UniRef90	UniRef90_A0A3R6UXW7	Phage head-tail adapter protein	NA
UHGV-0055566_11	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0055566_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0055566_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0055566_12	PHROG	phrog_2550	NA	unknown function
UHGV-0055566_12	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0055566_12	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0055566_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0055566_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0055566_13	UniRef90	UniRef90_A0A373ZD06	Phage major capsid protein	NA
UHGV-0055566_13	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0055566_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0055566_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0055566_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0055566_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0055566_14	KOfam	K06904	NA	NA
UHGV-0055566_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0055566_14	UniRef90	UniRef90_A0A417PEP5	HK97 family phage prohead protease	NA
UHGV-0055566_14	eggNOG-mapper	913865.DOT_5634	Phage prohead protease, HK97 family	NA
UHGV-0055566_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0055566_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0055566_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0055566_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0055566_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0055566_15	UniRef90	UniRef90_A0A373ZD56	Phage portal protein	NA
UHGV-0055566_15	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0055566_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0055566_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0055566_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0055566_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0055566_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0055566_16	UniRef90	UniRef90_A0A373ZFM8	Terminase large subunit	NA
UHGV-0055566_16	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0055566_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0055566_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0055566_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0055566_16	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0055566_17	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0055566_17	UniRef90	UniRef90_R5V087	Phage terminase small subunit P27 family	NA
UHGV-0055566_17	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0055566_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0055566_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0055566_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0055566_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055566_18	UniRef90	UniRef90_UPI00189E7D6D	HNH endonuclease	NA
UHGV-0055566_18	eggNOG-mapper	358681.BBR47_29120	HNH nucleases	NA
UHGV-0055566_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0055566_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0055566_18	Structural annotation	TIGR02646	NA	NA
UHGV-0055566_19	PHROG	phrog_199	holin	lysis
UHGV-0055566_19	UniRef90	UniRef90_A0A3R6TFD1	Holin	NA
UHGV-0055566_19	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0055566_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0055566_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0055566_19	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0055566_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0055566_21	PHROG	phrog_11237	NA	unknown function
UHGV-0055566_21	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0055566_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0055566_22	PHROG	phrog_435	endolysin	lysis
UHGV-0055566_22	UniRef90	UniRef90_A0A3R6ZZA0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055566_22	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055566_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0055566_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0055566_22	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0055566_23	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0055566_23	eggNOG-mapper	610130.Closa_1388	NA	NA
UHGV-0055566_23	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0055566_25	PHROG	phrog_7566	NA	unknown function
UHGV-0055566_25	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0055566_28	PHROG	phrog_24368	NA	unknown function
UHGV-0055566_28	eggNOG-mapper	1235792.C808_00071	NA	NA
UHGV-0055566_29	PHROG	phrog_15077	NA	unknown function
UHGV-0055566_29	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0055566_29	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0055566_29	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0055566_30	PHROG	phrog_8470	NA	unknown function
UHGV-0055566_30	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-0055566_30	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0055566_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0055566_30	Structural annotation	PF14284	NA	NA
UHGV-0055566_31	PHROG	phrog_4433	NA	unknown function
UHGV-0055566_31	UniRef90	UniRef90_W0HPP5	C-type lectin family member (2D393) / c-type lectin family member (2D393)	NA
UHGV-0055566_31	eggNOG-mapper	2342.SOPEG_2455	regulation of DNA-templated transcription, elongation	NA
UHGV-0055566_31	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0055566_31	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0055566_32	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0055566_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0055566_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0055566_33	UniRef90	UniRef90_A0A417PKX1	RNase H type-1 domain-containing protein	NA
UHGV-0055566_33	eggNOG-mapper	1116472.MGMO_8c00720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0055566_33	Pfam	PF00075	RNase H	RNase_H
UHGV-0055566_33	COG	COG0328	Ribonuclease HI	NA
UHGV-0055566_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0055566_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0055566_34	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0055566_34	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0055566_36	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0055566_36	Structural annotation	PF20063	NA	NA
UHGV-0055566_37	PHROG	phrog_2668	NA	unknown function
UHGV-0055566_37	UniRef90	UniRef90_UPI0018AB8424	restriction endonuclease subunit S	NA
UHGV-0055566_37	eggNOG-mapper	1201292.DR75_1653	Type I restriction modification DNA specificity domain	NA
UHGV-0055566_37	PADLOC	Specificity_I_00134	Type I specificity subunit	RM
UHGV-0055566_37	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0055566_38	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0055566_38	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0055566_38	UniRef90	UniRef90_UPI001D0F1512	SAM-dependent methyltransferase	NA
UHGV-0055566_38	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0055566_38	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0055566_38	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0055566_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0055566_38	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0055566_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0055566_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0055566_43	UniRef90	UniRef90_UPI00189D7AB4	helix-turn-helix domain-containing protein	NA
UHGV-0055566_43	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055566_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0055566_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055566_43	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0055566_44	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0055566_44	UniRef90	UniRef90_UPI00189ED8FE	helix-turn-helix domain-containing protein	NA
UHGV-0055566_44	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055566_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0055566_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055566_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0055566_45	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0055566_45	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0055566_45	UniRef90	UniRef90_UPI0018A10D95	3'-5' exonuclease	NA
UHGV-0055566_45	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0055566_45	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0055566_45	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0055566_45	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0055566_45	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0055566_46	KOfam	K14059	int; integrase	NA
UHGV-0055566_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0055566_46	UniRef90	UniRef90_UPI00189E922D	site-specific integrase	NA
UHGV-0055566_46	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0055566_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0055566_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0055566_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA