UHGV-0055741

Genome information

Genome length 41,189 bps

CDS count 66

Completeness 72.27% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055741
vOTU ID	vOTU-025324
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51388
BioSample	SAMEA2147991
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.6
Jumbo phage	No

Genome content
Genome length	41,189 bps
GC content	36.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	87.98%
Average CDS length	551.68 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055741_1	UniRef90	UniRef90_A0A3E5AKX4	XRE family transcriptional regulator	NA
UHGV-0055741_1	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0055741_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0055741_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0055741_5	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055741_5	UniRef90	UniRef90_UPI000F544BE5	AP2 domain-containing protein	NA
UHGV-0055741_5	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0055741_5	Pfam	PF00847	AP2 domain	AP2
UHGV-0055741_5	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0055741_6	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0055741_6	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0055741_7	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0055741_7	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0055741_7	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0055741_7	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0055741_7	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0055741_7	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0055741_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0055741_8	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-0055741_8	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0055741_8	Pfam	PF11753	NA	DUF3310
UHGV-0055741_8	Structural annotation	PF11753	NA	NA
UHGV-0055741_9	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0055741_9	UniRef90	UniRef90_UPI001020B14A	DnaD domain protein	NA
UHGV-0055741_9	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-0055741_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0055741_11	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0055741_11	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0055741_16	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0055741_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0055741_20	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0055741_20	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0055741_20	COG	COG5410	NA	NA
UHGV-0055741_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0055741_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0055741_21	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0055741_21	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0055741_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0055741_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0055741_22	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0055741_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0055741_23	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0055741_23	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0055741_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0055741_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0055741_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0055741_25	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0055741_25	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0055741_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0055741_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0055741_26	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0055741_26	Structural annotation	PF21169	NA	NA
UHGV-0055741_27	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0055741_28	PHROG	phrog_4105	NA	unknown function
UHGV-0055741_28	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0055741_29	PHROG	phrog_1129	holin	lysis
UHGV-0055741_29	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0055741_29	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0055741_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0055741_29	Structural annotation	PF06946	NA	NA
UHGV-0055741_30	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0055741_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0055741_31	PHROG	phrog_1233	NA	unknown function
UHGV-0055741_31	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0055741_32	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0055741_32	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0055741_33	Structural annotation	PF05657	NA	NA
UHGV-0055741_34	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0055741_34	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0055741_36	PHROG	phrog_36112	NA	unknown function
UHGV-0055741_36	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0055741_36	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0055741_36	Structural annotation	PF16478	NA	NA
UHGV-0055741_38	PHROG	phrog_28918	NA	unknown function
UHGV-0055741_38	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0055741_38	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0055741_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0055741_39	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0055741_39	eggNOG-mapper	1234679.BN424_1434	NA	NA
UHGV-0055741_39	Pfam	PF16729	NA	DUF5067
UHGV-0055741_39	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0055741_40	PHROG	phrog_1194	NA	unknown function
UHGV-0055741_40	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0055741_40	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0055741_41	PHROG	phrog_1401	NA	unknown function
UHGV-0055741_41	Structural annotation	PF07761	NA	NA
UHGV-0055741_42	PHROG	phrog_16267	NA	unknown function
UHGV-0055741_42	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0055741_42	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0055741_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0055741_42	COG	COG4926	Phage-related protein	NA
UHGV-0055741_42	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0055741_43	PHROG	phrog_2566	NA	unknown function
UHGV-0055741_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0055741_44	PHROG	phrog_291	endolysin	lysis
UHGV-0055741_44	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0055741_44	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0055741_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0055741_44	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0055741_44	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0055741_45	Structural annotation	PF13108	NA	NA
UHGV-0055741_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0055741_46	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0055741_46	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0055741_46	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0055741_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0055741_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055741_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055741_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0055741_50	PHROG	phrog_18781	NA	unknown function
UHGV-0055741_50	UniRef90	UniRef90_N9Z4T1	T5orf172 domain-containing protein	NA
UHGV-0055741_50	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0055741_50	Structural annotation	PF10544	NA	NA
UHGV-0055741_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0055741_51	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0055741_51	UniRef90	UniRef90_UPI00119E59CF	phage antirepressor KilAC domain-containing protein	NA
UHGV-0055741_51	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0055741_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0055741_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0055741_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0055741_51	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0055741_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0055741_53	Structural annotation	PF10552	NA	NA
UHGV-0055741_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0055741_55	PHROG	phrog_26861	NA	unknown function
UHGV-0055741_55	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0055741_55	eggNOG-mapper	1121335.Clst_1307	PFAM single-strand binding protein	NA
UHGV-0055741_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0055741_55	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0055741_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0055741_55	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0055741_57	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0055741_57	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055741_57	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0055741_57	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0055741_57	Pfam	PF13476	AAA domain	AAA_23
UHGV-0055741_57	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0055741_57	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0055741_58	PHROG	phrog_2164	NA	unknown function
UHGV-0055741_58	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0055741_59	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0055741_59	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0055741_59	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0055741_59	Pfam	PF03837	RecT family	RecT
UHGV-0055741_59	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0055741_59	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0055741_59	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0055741_60	PHROG	phrog_25456	NA	unknown function
UHGV-0055741_61	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0055741_61	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0055741_61	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0055741_61	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0055741_61	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0055741_61	Structural annotation	PF02540, NF010587, COG0519	NA	NA
UHGV-0055741_62	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0055741_62	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0055741_62	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0055741_62	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0055741_62	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0055741_62	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0055741_63	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0055741_63	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0055741_63	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0055741_63	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-0055741_63	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0055741_63	dbAPIS	APIS058	NA	NA
UHGV-0055741_63	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0055741_63	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0055741_64	PHROG	phrog_2715	NA	unknown function
UHGV-0055741_64	UniRef90	UniRef90_A0A1B8RSY6	NA	NA
UHGV-0055741_64	eggNOG-mapper	171693.BN988_01626	NA	NA
UHGV-0055741_64	Structural annotation	PF18406	NA	NA
UHGV-0055741_66	eggNOG-mapper	742765.HMPREF9457_00110	transposase IS116 IS110 IS902 family	NA
UHGV-0055741_66	COG	COG3547	Transposase	NA