UHGV-0055773

Genome information

vOTU vOTU-019140

Genome length 33,569 bps

CDS count 47

Completeness 74.47% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055773
vOTU ID	vOTU-019140
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_65635
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.45
Jumbo phage	No

Genome content
Genome length	33,569 bps
GC content	42.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.70%
Average CDS length	635.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055773_1	eggNOG-mapper	397291.C804_00971	NA	NA
UHGV-0055773_1	Structural annotation	PF02701, TIGR03655, COG3677	NA	NA
UHGV-0055773_2	PHROG	phrog_20593	NA	unknown function
UHGV-0055773_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0055773_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0055773_5	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0055773_5	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0055773_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0055773_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0055773_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0055773_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0055773_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0055773_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055773_6	UniRef90	UniRef90_A0A7X5CGS1	AP2/ERF domain-containing protein	NA
UHGV-0055773_6	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0055773_6	Structural annotation	PF00847	NA	NA
UHGV-0055773_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0055773_7	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0055773_7	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0055773_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0055773_8	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0055773_8	UniRef90	UniRef90_A0A5J5HFE5	Ribbon-helix-helix domain-containing protein	NA
UHGV-0055773_8	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0055773_9	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0055773_9	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-0055773_9	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0055773_9	Structural annotation	PF10729, MF_01580, NF007510	NA	NA
UHGV-0055773_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0055773_10	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0055773_10	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0055773_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0055773_10	COG	COG2369	NA	NA
UHGV-0055773_10	Structural annotation	PF06152	NA	NA
UHGV-0055773_11	PHROG	phrog_3754	NA	unknown function
UHGV-0055773_11	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0055773_12	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0055773_12	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0055773_13	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0055773_13	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055773_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0055773_14	AcrCatalog	cluster_37488	NA	NA
UHGV-0055773_15	eggNOG-mapper	679200.HMPREF9333_02253	Helix-turn-helix XRE-family like proteins	NA
UHGV-0055773_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055773_15	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0055773_15	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0055773_16	AcrCatalog	cluster_81672	NA	NA
UHGV-0055773_17	PHROG	phrog_21718	NA	unknown function
UHGV-0055773_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0055773_18	PHROG	phrog_22984	NA	unknown function
UHGV-0055773_19	PHROG	phrog_16490	NA	unknown function
UHGV-0055773_19	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0055773_20	PHROG	phrog_20016	NA	unknown function
UHGV-0055773_20	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0055773_20	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0055773_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0055773_21	PHROG	phrog_28802	NA	unknown function
UHGV-0055773_21	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0055773_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0055773_22	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0055773_22	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0055773_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0055773_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0055773_23	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0055773_23	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0055773_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0055773_23	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0055773_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0055773_24	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0055773_26	PHROG	phrog_918	NA	unknown function
UHGV-0055773_26	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-0055773_26	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0055773_26	Pfam	PF19791	NA	DUF6275
UHGV-0055773_26	Structural annotation	PF19791	NA	NA
UHGV-0055773_27	PHROG	phrog_774	NA	unknown function
UHGV-0055773_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0055773_28	PHROG	phrog_18218	NA	unknown function
UHGV-0055773_28	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0055773_28	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0055773_28	Structural annotation	PF06946	NA	NA
UHGV-0055773_29	PHROG	phrog_3366	NA	unknown function
UHGV-0055773_29	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0055773_29	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0055773_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0055773_30	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0055773_30	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0055773_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0055773_30	Structural annotation	PF11114	NA	NA
UHGV-0055773_31	PHROG	phrog_3266	tail completion	connector
UHGV-0055773_31	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0055773_31	Structural annotation	PF12691	NA	NA
UHGV-0055773_32	PHROG	phrog_3099	NA	unknown function
UHGV-0055773_32	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0055773_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0055773_33	PHROG	phrog_11299	NA	unknown function
UHGV-0055773_33	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0055773_33	Structural annotation	PF10666	NA	NA
UHGV-0055773_34	PHROG	phrog_706	NA	unknown function
UHGV-0055773_34	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0055773_34	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0055773_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0055773_34	Structural annotation	PF06854	NA	NA
UHGV-0055773_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0055773_35	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0055773_35	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0055773_35	COG	COG1511	NA	NA
UHGV-0055773_35	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0055773_36	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0055773_37	PHROG	phrog_6616	tail protein	tail
UHGV-0055773_37	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0055773_37	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0055773_37	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0055773_37	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0055773_38	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0055773_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0055773_39	PHROG	phrog_6745	endolysin	lysis
UHGV-0055773_39	UniRef90	UniRef90_UPI00191FD049	glycoside hydrolase family 25 protein	NA
UHGV-0055773_39	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0055773_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0055773_39	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0055773_39	Structural annotation	PF01183, NF008522, COG3757	NA	NA
UHGV-0055773_40	PHROG	phrog_14030	NA	unknown function
UHGV-0055773_40	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-0055773_40	eggNOG-mapper	411468.CLOSCI_01513	NA	NA
UHGV-0055773_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0055773_41	KOfam	K14059	int; integrase	NA
UHGV-0055773_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0055773_41	UniRef90	UniRef90_D4LPN8	Phage integrase family	NA
UHGV-0055773_41	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0055773_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0055773_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0055773_41	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0055773_42	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0055773_42	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0055773_42	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0055773_42	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0055773_42	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0055773_43	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0055773_43	PHROG	phrog_8810	NA	unknown function
UHGV-0055773_43	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0055773_43	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0055773_43	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0055773_43	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0055773_43	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0055773_43	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0055773_46	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0055773_46	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0055773_46	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0055773_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0055773_46	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA