UHGV-0055930

Genome information

Genome length 44,920 bps

CDS count 81

Completeness 96.11% (high-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0055930
vOTU ID	vOTU-008770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_43990
BioSample	SAMEA2148105
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.01
Jumbo phage	No

Genome content
Genome length	44,920 bps
GC content	30.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	84.85%
Average CDS length	472.30 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0055930_2	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0055930_2	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0055930_2	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0055930_2	eggNOG-mapper	1235835.C814_00621	Transcriptional regulator, AbrB family	NA
UHGV-0055930_2	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0055930_2	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0055930_2	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0055930_2	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0055930_5	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0055930_5	UniRef90	UniRef90_UPI0018C46309	ATP-binding protein	NA
UHGV-0055930_5	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0055930_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0055930_5	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0055930_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0055930_6	UniRef90	UniRef90_A0A7X5DCB3	PDDEXK_1 domain-containing protein	NA
UHGV-0055930_6	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0055930_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0055930_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0055930_7	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0055930_7	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0055930_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0055930_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0055930_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0055930_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0055930_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0055930_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0055930_8	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0055930_8	Pfam	PF05772	NinB protein	NinB
UHGV-0055930_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0055930_9	PHROG	phrog_7566	NA	unknown function
UHGV-0055930_11	PHROG	phrog_16304	NA	unknown function
UHGV-0055930_11	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0055930_11	Pfam	PF19808	NA	DUF6291
UHGV-0055930_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0055930_11	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0055930_12	PHROG	phrog_4973	NA	unknown function
UHGV-0055930_12	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0055930_12	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0055930_12	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0055930_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0055930_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0055930_14	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0055930_14	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0055930_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0055930_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0055930_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0055930_17	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0055930_17	UniRef90	UniRef90_I0GS02	Putative phage protein	NA
UHGV-0055930_17	eggNOG-mapper	1123309.AQYB01000014_gene918	NA	NA
UHGV-0055930_19	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0055930_20	PHROG	phrog_625	NA	unknown function
UHGV-0055930_20	UniRef90	UniRef90_A0A3A8X7G1	ASCH domain-containing protein	NA
UHGV-0055930_20	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0055930_20	Structural annotation	PF12961	NA	NA
UHGV-0055930_22	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0055930_22	UniRef90	UniRef90_A0A7C0U269	tRNA (Adenine-N(6)-)-methyltransferase	NA
UHGV-0055930_22	eggNOG-mapper	407392.A0MN47_9CAUD	methyltransferase activity	NA
UHGV-0055930_22	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0055930_22	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0055930_23	PHROG	phrog_7175	NA	unknown function
UHGV-0055930_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0055930_28	UniRef90	UniRef90_UPI00195E30EE	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0055930_28	eggNOG-mapper	469604.HMPREF0946_01118	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0055930_28	PADLOC	SspD_00001	SspD	SSP
UHGV-0055930_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0055930_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0055930_28	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0055930_33	KOfam	K18941	arlR; two-component system, OmpR family, response regulator ArlR	NA
UHGV-0055930_33	PHROG	phrog_731	NA	unknown function
UHGV-0055930_33	eggNOG-mapper	471875.RUMLAC_02367	Response regulator receiver domain	NA
UHGV-0055930_33	Pfam	PF00486	Transcriptional regulatory protein, C terminal	Trans_reg_C
UHGV-0055930_33	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0055930_42	PHROG	phrog_10415	NA	unknown function
UHGV-0055930_42	UniRef90	UniRef90_A0A843GQJ7	LPD29 domain-containing protein (Fragment)	NA
UHGV-0055930_42	eggNOG-mapper	1392486.JIAF01000001_gene326	DnaJ molecular chaperone homology domain	NA
UHGV-0055930_42	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0055930_42	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0055930_44	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0055930_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0055930_45	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0055930_46	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0055930_50	PHROG	phrog_1454	NA	unknown function
UHGV-0055930_51	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0055930_51	UniRef90	UniRef90_UPI000934E5E6	NA	NA
UHGV-0055930_51	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0055930_51	Pfam	PF14359	NA	DUF4406
UHGV-0055930_51	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0055930_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0055930_54	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0055930_55	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0055930_55	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0055930_55	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0055930_55	COG	COG5410	NA	NA
UHGV-0055930_55	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0055930_56	PHROG	phrog_1233	NA	unknown function
UHGV-0055930_56	UniRef90	UniRef90_C8PDE4	Peptidase_M78 domain-containing protein	NA
UHGV-0055930_56	eggNOG-mapper	86416.Clopa_2540	NA	NA
UHGV-0055930_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0055930_58	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0055930_58	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0055930_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0055930_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0055930_59	Structural annotation	PF14265	NA	NA
UHGV-0055930_60	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0055930_60	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0055930_60	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0055930_60	Pfam	PF17236	NA	DUF5309
UHGV-0055930_60	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0055930_61	KOfam	K17249	pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]	NA
UHGV-0055930_61	UniRef90	UniRef90_A0A3A9SUZ7	Glycosyltransferase	NA
UHGV-0055930_61	eggNOG-mapper	1294265.JCM21738_878	Glycosyl transferases group 1	NA
UHGV-0055930_61	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-0055930_61	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0055930_61	Structural annotation	PF00534, PF16994, MF_01695, TIGR04005, COG0438	NA	NA
UHGV-0055930_63	Structural annotation	TIGR01560	NA	NA
UHGV-0055930_64	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0055930_65	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0055930_66	Structural annotation	PF05657	NA	NA
UHGV-0055930_67	PHROG	phrog_158	major tail protein	tail
UHGV-0055930_67	UniRef90	UniRef90_A0A7Z7CEA8	Phage tail tube protein, TTP	NA
UHGV-0055930_67	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-0055930_67	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0055930_67	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0055930_68	Structural annotation	PF16478	NA	NA
UHGV-0055930_70	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0055930_70	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0055930_70	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0055930_71	PHROG	phrog_1194	NA	unknown function
UHGV-0055930_71	eggNOG-mapper	324057.Pjdr2_1553	NA	NA
UHGV-0055930_71	Pfam	PF20458	NA	DUF6711
UHGV-0055930_72	PHROG	phrog_6616	tail protein	tail
UHGV-0055930_72	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-0055930_72	COG	COG4926	Phage-related protein	NA
UHGV-0055930_73	PHROG	phrog_372	tail protein	tail
UHGV-0055930_73	UniRef90	UniRef90_A0A415H839	Pilus assembly protein	NA
UHGV-0055930_73	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0055930_73	Pfam	PF05895	NA	DUF859
UHGV-0055930_73	COG	COG4675	Phage tail collar domain	NA
UHGV-0055930_73	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0055930_74	PHROG	phrog_13632	NA	unknown function
UHGV-0055930_74	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA
UHGV-0055930_75	PHROG	phrog_1794	amidase	lysis
UHGV-0055930_75	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0055930_75	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0055930_75	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0055930_75	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0055930_75	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0055930_75	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-0055930_77	UniRef90	UniRef90_R7P7N4	Endoribonuclease EndoA	NA
UHGV-0055930_77	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0055930_77	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0055930_78	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0055930_78	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0055930_78	UniRef90	UniRef90_R6YGA8	Post-exponential-phase responses transcriptional regulator	NA
UHGV-0055930_78	eggNOG-mapper	1126885.I3VYY8_9CAUD	sequence-specific DNA binding	NA
UHGV-0055930_78	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0055930_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0055930_78	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0055930_78	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA