UHGV-0056147

Genome information

Genome length 33,208 bps

CDS count 45

Completeness 94.56% (high-quality)

geNomad score 0.9680

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056147
vOTU ID	vOTU-014212
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_61397
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9680
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.7
Jumbo phage	No

Genome content
Genome length	33,208 bps
GC content	57.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.30%
Average CDS length	709.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056147_1	KOfam	K14059	int; integrase	NA
UHGV-0056147_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0056147_1	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0056147_1	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0056147_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0056147_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0056147_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0056147_2	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0056147_2	PHROG	phrog_10292	NA	unknown function
UHGV-0056147_2	UniRef90	UniRef90_UPI0009E322BA	NINE protein	NA
UHGV-0056147_2	eggNOG-mapper	556261.HMPREF0240_02202	TM2 domain	NA
UHGV-0056147_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0056147_2	Pfam	PF05154	TM2 domain	TM2
UHGV-0056147_2	COG	COG2314	NA	NA
UHGV-0056147_4	UniRef90	UniRef90_UPI00195679C6	helix-turn-helix domain-containing protein	NA
UHGV-0056147_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056147_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0056147_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0056147_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0056147_5	UniRef90	UniRef90_UPI00195CC469	helix-turn-helix domain-containing protein	NA
UHGV-0056147_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056147_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056147_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0056147_6	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-0056147_6	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0056147_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056147_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0056147_6	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0056147_7	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0056147_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0056147_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0056147_7	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0056147_7	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0056147_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0056147_8	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0056147_8	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0056147_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0056147_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0056147_8	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0056147_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0056147_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0056147_9	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0056147_9	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0056147_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0056147_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0056147_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0056147_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0056147_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0056147_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0056147_11	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0056147_11	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0056147_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0056147_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0056147_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0056147_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0056147_12	PHROG	phrog_27290	NA	unknown function
UHGV-0056147_12	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0056147_12	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0056147_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0056147_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0056147_15	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0056147_16	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-0056147_16	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0056147_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0056147_21	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0056147_21	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0056147_22	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0056147_22	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0056147_22	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0056147_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056147_23	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0056147_23	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0056147_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0056147_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0056147_24	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0056147_24	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0056147_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0056147_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0056147_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0056147_24	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0056147_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0056147_25	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0056147_25	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0056147_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0056147_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0056147_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0056147_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0056147_26	KOfam	K06904	NA	NA
UHGV-0056147_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0056147_26	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0056147_26	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0056147_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0056147_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0056147_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0056147_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0056147_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0056147_27	UniRef90	UniRef90_UPI0012F81883	phage major capsid protein	NA
UHGV-0056147_27	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0056147_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0056147_27	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0056147_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0056147_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0056147_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0056147_28	PHROG	phrog_2550	NA	unknown function
UHGV-0056147_28	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0056147_28	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0056147_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0056147_29	PHROG	phrog_19734	NA	unknown function
UHGV-0056147_29	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0056147_29	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0056147_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0056147_30	eggNOG-mapper	935948.KE386495_gene1329	NA	NA
UHGV-0056147_30	Structural annotation	PF05657	NA	NA
UHGV-0056147_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0056147_31	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0056147_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0056147_31	Structural annotation	TIGR01725	NA	NA
UHGV-0056147_32	PHROG	phrog_88	major tail protein	tail
UHGV-0056147_32	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0056147_32	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0056147_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0056147_32	COG	COG5492	NA	NA
UHGV-0056147_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0056147_33	Structural annotation	PF11836	NA	NA
UHGV-0056147_34	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0056147_34	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0056147_34	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0056147_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0056147_34	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0056147_35	UniRef90	UniRef90_UPI00111F6E2C	DNRLRE domain-containing protein	NA
UHGV-0056147_35	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0056147_35	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0056147_36	PHROG	phrog_26795	NA	unknown function
UHGV-0056147_36	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0056147_36	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0056147_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0056147_37	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-0056147_38	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0056147_38	PHROG	phrog_36982	NA	unknown function
UHGV-0056147_38	eggNOG-mapper	649747.HMPREF0083_00644	NA	NA
UHGV-0056147_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0056147_40	PHROG	phrog_19111	NA	unknown function
UHGV-0056147_40	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-0056147_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0056147_41	PHROG	phrog_13126	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0056147_41	UniRef90	UniRef90_UPI001958F553	glycosyl transferase family 2	NA
UHGV-0056147_41	eggNOG-mapper	742738.HMPREF9460_00302	transferase activity, transferring glycosyl groups	NA
UHGV-0056147_41	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-0056147_41	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0056147_41	Structural annotation	PF18768, PF13641, MF_00994, MF_00316, TIGR04195, COG0457, COG0463	NA	NA
UHGV-0056147_42	KOfam	K07273	acm; lysozyme	NA
UHGV-0056147_42	PHROG	phrog_291	endolysin	lysis
UHGV-0056147_42	UniRef90	UniRef90_C0C5B2	Glycosyl hydrolase family 25	NA
UHGV-0056147_42	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0056147_42	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0056147_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0056147_42	COG	COG1388	LysM repeat	NA
UHGV-0056147_42	Structural annotation	PF09992, PF01183, COG3698, COG3757	NA	NA
UHGV-0056147_43	PHROG	phrog_10091	holin	lysis
UHGV-0056147_43	UniRef90	UniRef90_A0A1C6KZS6	Small integral membrane protein	NA
UHGV-0056147_43	eggNOG-mapper	1225805.J7KGX7_9CAUD	Bacteriophage holin	NA
UHGV-0056147_43	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0056147_43	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0056147_43	Structural annotation	COG5546	NA	NA
UHGV-0056147_44	PHROG	phrog_1009	NA	unknown function
UHGV-0056147_44	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA