UHGV-0056305

Genome information

vOTU vOTU-019074

Genome length 38,504 bps

CDS count 53

Completeness 68.57% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056305
vOTU ID	vOTU-019074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32795
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.37
Jumbo phage	No

Genome content
Genome length	38,504 bps
GC content	37.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.80%
Average CDS length	641.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056305_1	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0056305_1	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0056305_1	UniRef90	UniRef90_UPI00125CCC78	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0056305_1	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0056305_1	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0056305_1	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0056305_2	PHROG	phrog_16304	NA	unknown function
UHGV-0056305_2	UniRef90	UniRef90_UPI00125CB8AB	NA	NA
UHGV-0056305_2	eggNOG-mapper	694427.Palpr_2953	NA	NA
UHGV-0056305_2	Pfam	PF19808	NA	DUF6291
UHGV-0056305_3	PHROG	phrog_29547	NA	unknown function
UHGV-0056305_3	UniRef90	UniRef90_F3PDU6	Conserved domain protein	NA
UHGV-0056305_3	eggNOG-mapper	1268240.ATFI01000008_gene2559	NA	NA
UHGV-0056305_3	Pfam	PF20338	NA	DUF6633
UHGV-0056305_6	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0056305_6	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-0056305_7	eggNOG-mapper	547042.BACCOPRO_02157	MutS domain I	NA
UHGV-0056305_7	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0056305_9	PHROG	phrog_924	NA	unknown function
UHGV-0056305_9	UniRef90	UniRef90_A0A6A2RVW0	NA	NA
UHGV-0056305_9	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0056305_9	Pfam	PF04448	NA	DUF551
UHGV-0056305_9	Structural annotation	PF04448	NA	NA
UHGV-0056305_14	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0056305_16	PHROG	phrog_28300	NA	unknown function
UHGV-0056305_17	Structural annotation	PF17574, TIGR04550	NA	NA
UHGV-0056305_18	PHROG	phrog_7314	NA	unknown function
UHGV-0056305_19	PHROG	phrog_12005	NA	unknown function
UHGV-0056305_21	eggNOG-mapper	411476.BACOVA_03907	NA	NA
UHGV-0056305_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0056305_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0056305_22	UniRef90	UniRef90_A0A7J5MNL6	Terminase small subunit	NA
UHGV-0056305_22	eggNOG-mapper	1122971.BAME01000163_gene6624	Terminase small subunit	NA
UHGV-0056305_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0056305_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0056305_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0056305_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0056305_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0056305_23	UniRef90	UniRef90_A0A4S2FPD3	PBSX family phage terminase large subunit	NA
UHGV-0056305_23	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-0056305_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0056305_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0056305_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0056305_23	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0056305_24	UniRef90	UniRef90_A0A6M4K7H8	Helix-turn-helix domain-containing protein	NA
UHGV-0056305_24	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0056305_24	Structural annotation	PF02796	NA	NA
UHGV-0056305_26	UniRef90	UniRef90_A0A6N2S5R7	SGNH_hydro domain-containing protein	NA
UHGV-0056305_26	eggNOG-mapper	357276.EL88_11200	lipolytic protein G-D-S-L family	NA
UHGV-0056305_26	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0056305_26	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0056305_27	Structural annotation	PF16640	NA	NA
UHGV-0056305_28	eggNOG-mapper	1227276.HMPREF9148_00156	NA	NA
UHGV-0056305_29	PHROG	phrog_38044	NA	unknown function
UHGV-0056305_29	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0056305_29	COG	COG4926	Phage-related protein	NA
UHGV-0056305_29	Structural annotation	PF04862, PF21634, NF033675	NA	NA
UHGV-0056305_30	PHROG	phrog_26568	NA	unknown function
UHGV-0056305_30	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-0056305_30	Structural annotation	PF02927, PF19266	NA	NA
UHGV-0056305_31	PHROG	phrog_22157	NA	unknown function
UHGV-0056305_31	eggNOG-mapper	1122971.BAME01000119_gene6177	NA	NA
UHGV-0056305_31	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0056305_33	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0056305_33	PHROG	phrog_14295	NA	unknown function
UHGV-0056305_33	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-0056305_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0056305_34	PHROG	phrog_4002	NA	unknown function
UHGV-0056305_34	UniRef90	UniRef90_I9F8W1	NA	NA
UHGV-0056305_34	eggNOG-mapper	449673.BACSTE_00566	NA	NA
UHGV-0056305_34	Pfam	PF14730	NA	DUF4468
UHGV-0056305_34	Structural annotation	PF14730	NA	NA
UHGV-0056305_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0056305_36	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0056305_36	UniRef90	UniRef90_I9QJ75	KilA-N domain-containing protein	NA
UHGV-0056305_36	eggNOG-mapper	1127696.HMPREF9134_00474	Phage antirepressor protein KilAC domain	NA
UHGV-0056305_36	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0056305_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0056305_36	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0056305_36	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0056305_37	UniRef90	UniRef90_C3QUD1	Phage regulatory protein, Rha family	NA
UHGV-0056305_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0056305_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0056305_39	UniRef90	UniRef90_A0A7J5MMJ7	Phage antirepressor Ant	NA
UHGV-0056305_39	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-0056305_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0056305_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0056305_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0056305_39	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0056305_40	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0056305_40	UniRef90	UniRef90_A0A4S2FP64	KilA-N domain-containing protein	NA
UHGV-0056305_40	eggNOG-mapper	411901.BACCAC_01204	KilA-N domain	NA
UHGV-0056305_40	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0056305_40	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0056305_41	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0056305_42	PHROG	phrog_6195	tail protein	tail
UHGV-0056305_42	UniRef90	UniRef90_I8VT13	ABC transporter C family member 12	NA
UHGV-0056305_42	eggNOG-mapper	1122971.BAME01000143_gene6484	NA	NA
UHGV-0056305_44	PHROG	phrog_24272	NA	unknown function
UHGV-0056305_44	eggNOG-mapper	1122971.BAME01000143_gene6482	NA	NA
UHGV-0056305_44	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0056305_45	PHROG	phrog_23418	NA	unknown function
UHGV-0056305_45	eggNOG-mapper	1122971.BAME01000143_gene6481	NA	NA
UHGV-0056305_45	Structural annotation	PF08873	NA	NA
UHGV-0056305_46	PHROG	phrog_26639	NA	unknown function
UHGV-0056305_46	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0056305_46	Structural annotation	PF20459	NA	NA
UHGV-0056305_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0056305_48	UniRef90	UniRef90_A0A015ZJH7	Phage major capsid protein, HK97 family	NA
UHGV-0056305_48	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0056305_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0056305_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0056305_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0056305_48	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0056305_49	KOfam	K06904	NA	NA
UHGV-0056305_49	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0056305_49	UniRef90	UniRef90_I8VW13	HK97 family phage prohead protease	NA
UHGV-0056305_49	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0056305_49	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0056305_49	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0056305_49	COG	COG3740	Phage head maturation protease	NA
UHGV-0056305_49	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0056305_50	PHROG	phrog_12	portal protein	head and packaging
UHGV-0056305_50	UniRef90	UniRef90_A0A069S1U3	Phage portal family protein	NA
UHGV-0056305_50	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0056305_50	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0056305_50	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0056305_53	eggNOG-mapper	1121129.KB903373_gene447	NA	NA