UHGV-0056345

Genome information

Genome length 42,779 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056345
vOTU ID	vOTU-064454
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_40348
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	89.89
Jumbo phage	No

Genome content
Genome length	42,779 bps
GC content	48.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	87.23%
Average CDS length	603.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056345_1	UniRef90	UniRef90_UPI001C38CABF	Abi family protein	NA
UHGV-0056345_1	eggNOG-mapper	877421.AUJT01000010_gene547	Abi-like protein	NA
UHGV-0056345_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0056345_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0056345_2	UniRef90	UniRef90_UPI00195C1B82	Abi family protein	NA
UHGV-0056345_2	eggNOG-mapper	927704.SELR_16790	Abi-like protein	NA
UHGV-0056345_2	PADLOC	AbiD	AbiD	Abi
UHGV-0056345_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0056345_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0056345_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0056345_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0056345_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0056345_3	UniRef90	UniRef90_R6B9X9	Repressor LexA	NA
UHGV-0056345_3	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0056345_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0056345_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0056345_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0056345_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0056345_4	UniRef90	UniRef90_A0A4R1PX28	DNA-binding XRE family transcriptional regulator	NA
UHGV-0056345_4	eggNOG-mapper	1314.HKU360_01664	Helix-turn-helix XRE-family like proteins	NA
UHGV-0056345_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056345_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056345_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0056345_8	PHROG	phrog_31911	NA	unknown function
UHGV-0056345_8	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-0056345_8	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-0056345_9	Structural annotation	PF17600	NA	NA
UHGV-0056345_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0056345_11	UniRef90	UniRef90_R6ADZ8	Siphovirus Gp157	NA
UHGV-0056345_11	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0056345_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0056345_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0056345_12	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0056345_12	UniRef90	UniRef90_UPI000F633C17	ATP-binding protein	NA
UHGV-0056345_12	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0056345_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0056345_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0056345_13	PHROG	phrog_2698	NA	unknown function
UHGV-0056345_13	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0056345_14	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0056345_14	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0056345_14	UniRef90	UniRef90_R6AUC1	Primase C-terminal domain protein	NA
UHGV-0056345_14	eggNOG-mapper	1232428.CAVO010000021_gene813	Primase C terminal 2 (PriCT-2)	NA
UHGV-0056345_14	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0056345_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0056345_14	COG	COG3598	RecA-family ATPase	NA
UHGV-0056345_14	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0056345_15	Structural annotation	PF05406	NA	NA
UHGV-0056345_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0056345_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0056345_18	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0056345_18	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0056345_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0056345_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0056345_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0056345_19	PHROG	phrog_16126	NA	unknown function
UHGV-0056345_20	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0056345_21	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0056345_22	PHROG	phrog_3243	NA	unknown function
UHGV-0056345_22	eggNOG-mapper	568816.Acin_1295	NA	NA
UHGV-0056345_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0056345_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0056345_23	UniRef90	UniRef90_R6AGU2	Phage terminase small subunit	NA
UHGV-0056345_23	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0056345_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0056345_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0056345_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0056345_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0056345_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0056345_24	UniRef90	UniRef90_A0A3B9DUU0	PBSX family phage terminase large subunit	NA
UHGV-0056345_24	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0056345_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0056345_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0056345_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0056345_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0056345_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0056345_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0056345_25	UniRef90	UniRef90_S7J9T3	SPP1 family phage portal protein	NA
UHGV-0056345_25	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0056345_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0056345_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0056345_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0056345_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0056345_26	UniRef90	UniRef90_A0A0J6WUK7	Phage minor structural protein GP20	NA
UHGV-0056345_26	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0056345_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0056345_26	Structural annotation	PF06810	NA	NA
UHGV-0056345_27	PHROG	phrog_247	major head protein	head and packaging
UHGV-0056345_27	UniRef90	UniRef90_S7HTI1	Coat protein	NA
UHGV-0056345_27	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0056345_27	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0056345_27	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0056345_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0056345_28	UniRef90	UniRef90_UPI00195C1C3E	minor capsid protein	NA
UHGV-0056345_28	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0056345_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0056345_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0056345_28	COG	COG2369	NA	NA
UHGV-0056345_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0056345_30	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0056345_30	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0056345_31	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0056345_31	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0056345_31	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0056345_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0056345_32	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0056345_32	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0056345_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0056345_32	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0056345_33	PHROG	phrog_525	NA	unknown function
UHGV-0056345_33	UniRef90	UniRef90_UPI0011A26FBC	NA	NA
UHGV-0056345_33	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0056345_33	Pfam	PF20765	NA	DUF6838
UHGV-0056345_33	Structural annotation	PF20765	NA	NA
UHGV-0056345_34	PHROG	phrog_1480	tail sheath	tail
UHGV-0056345_34	UniRef90	UniRef90_A0A269TCE8	Phage tail sheath protein	NA
UHGV-0056345_34	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-0056345_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0056345_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0056345_34	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0056345_35	PHROG	phrog_365	tail protein	tail
UHGV-0056345_35	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0056345_35	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0056345_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0056345_35	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0056345_36	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0056345_36	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0056345_36	eggNOG-mapper	1111454.HMPREF1250_0193	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0056345_36	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0056345_36	Structural annotation	PF08890	NA	NA
UHGV-0056345_37	PHROG	phrog_16692	NA	unknown function
UHGV-0056345_37	UniRef90	UniRef90_U7ULG1	Tail tape measure protein, TIGR01760 family	NA
UHGV-0056345_37	eggNOG-mapper	1111454.HMPREF1250_0194	Phage-related minor tail protein	NA
UHGV-0056345_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0056345_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0056345_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0056345_37	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0056345_38	PHROG	phrog_380	endolysin	lysis
UHGV-0056345_38	UniRef90	UniRef90_A0A2G5X817	LysM domain-containing protein	NA
UHGV-0056345_38	eggNOG-mapper	1273103.NM10_01019	LysM domain	NA
UHGV-0056345_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0056345_38	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0056345_39	PHROG	phrog_400	tail protein	tail
UHGV-0056345_39	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0056345_39	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0056345_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0056345_39	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0056345_40	PHROG	phrog_579	NA	unknown function
UHGV-0056345_40	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-0056345_40	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-0056345_40	Pfam	PF10844	NA	DUF2577
UHGV-0056345_40	Structural annotation	PF10844	NA	NA
UHGV-0056345_41	PHROG	phrog_120	baseplate protein	tail
UHGV-0056345_41	UniRef90	UniRef90_A0A0J6WX87	NA	NA
UHGV-0056345_41	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0056345_41	Pfam	PF10934	NA	DUF2634
UHGV-0056345_41	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0056345_42	PHROG	phrog_6	baseplate protein	tail
UHGV-0056345_42	UniRef90	UniRef90_U7UJ67	Baseplate J-like protein	NA
UHGV-0056345_42	eggNOG-mapper	1111454.HMPREF1250_0199	Baseplate J-like protein	NA
UHGV-0056345_42	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0056345_42	COG	COG3299	NA	NA
UHGV-0056345_42	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0056345_43	PHROG	phrog_521	tail protein	tail
UHGV-0056345_43	UniRef90	UniRef90_U7UIV1	PF10076 family protein	NA
UHGV-0056345_43	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0056345_43	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0056345_43	COG	COG3778	NA	NA
UHGV-0056345_43	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0056345_44	eggNOG-mapper	1111454.HMPREF1250_0201	tail collar domain protein	NA
UHGV-0056345_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0056345_45	KOfam	K14059	int; integrase	NA
UHGV-0056345_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0056345_45	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0056345_45	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0056345_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0056345_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0056345_45	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0056345_46	PHROG	phrog_32639	NA	unknown function
UHGV-0056345_46	Structural annotation	PF21611	NA	NA
UHGV-0056345_48	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-0056345_48	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0056345_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0056345_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0056345_50	KOfam	K07273	acm; lysozyme	NA
UHGV-0056345_50	PHROG	phrog_291	endolysin	lysis
UHGV-0056345_50	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0056345_50	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0056345_50	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0056345_50	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0056345_50	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0056345_51	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0056345_51	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0056345_53	UniRef90	UniRef90_A0A7G9B8H5	Tail fiber protein	NA
UHGV-0056345_53	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0056345_53	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0056345_53	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0056345_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0056345_56	PHROG	phrog_21498	NA	unknown function
UHGV-0056345_56	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0056345_56	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0056345_57	PHROG	phrog_21498	NA	unknown function
UHGV-0056345_57	UniRef90	UniRef90_A0A3R6J122	Chromosome partitioning protein ParB	NA
UHGV-0056345_57	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0056345_57	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0056345_57	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0056345_59	eggNOG-mapper	699218.HMPREF0889_1153	NA	NA
UHGV-0056345_60	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0056345_60	UniRef90	UniRef90_A0A3B9DV76	HTH_59 domain-containing protein	NA
UHGV-0056345_60	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-0056345_60	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0056345_60	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0056345_61	UniRef90	UniRef90_A0A3A9SPQ1	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0056345_61	eggNOG-mapper	1280682.AUKA01000003_gene1373	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0056345_61	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0056345_62	KOfam	K14059	int; integrase	NA
UHGV-0056345_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0056345_62	UniRef90	UniRef90_A0A3B9DUU2	Tyr recombinase domain-containing protein	NA
UHGV-0056345_62	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0056345_62	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0056345_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0056345_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA