UHGV-0056426

Genome information

Genome length 27,676 bps

CDS count 38

Completeness 80.44% (medium-quality)

geNomad score 0.9560

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056426
vOTU ID	vOTU-040143
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_56727
BioSample	SAMEA2155215
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9560
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.51
Jumbo phage	No

Genome content
Genome length	27,676 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	92.28%
Average CDS length	677.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056426_1	PHROG	phrog_25468	NA	unknown function
UHGV-0056426_1	COG	COG4926	Phage-related protein	NA
UHGV-0056426_1	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0056426_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0056426_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0056426_3	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0056426_3	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0056426_3	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0056426_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0056426_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0056426_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0056426_4	PHROG	phrog_706	NA	unknown function
UHGV-0056426_4	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0056426_4	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-0056426_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0056426_4	Structural annotation	PF06854	NA	NA
UHGV-0056426_5	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0056426_5	Structural annotation	PF10666	NA	NA
UHGV-0056426_6	PHROG	phrog_820	major tail protein	tail
UHGV-0056426_6	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0056426_6	COG	COG5492	NA	NA
UHGV-0056426_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0056426_7	Structural annotation	PF12691	NA	NA
UHGV-0056426_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0056426_8	UniRef90	UniRef90_A0A174ZTE4	Minor capsid protein	NA
UHGV-0056426_8	eggNOG-mapper	997296.PB1_16189	Minor capsid protein	NA
UHGV-0056426_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0056426_8	Structural annotation	PF11114	NA	NA
UHGV-0056426_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0056426_9	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0056426_9	eggNOG-mapper	1295642.H839_08324	Minor capsid protein	NA
UHGV-0056426_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0056426_9	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0056426_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0056426_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0056426_10	eggNOG-mapper	935836.JAEL01000086_gene50	NA	NA
UHGV-0056426_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0056426_12	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0056426_12	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0056426_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0056426_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0056426_13	eggNOG-mapper	195103.CPF_0955	NA	NA
UHGV-0056426_14	PHROG	phrog_30343	NA	unknown function
UHGV-0056426_14	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0056426_14	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0056426_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0056426_16	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0056426_16	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0056426_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0056426_16	COG	COG2369	NA	NA
UHGV-0056426_16	Structural annotation	PF06152	NA	NA
UHGV-0056426_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0056426_17	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0056426_17	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0056426_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0056426_17	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0056426_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0056426_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0056426_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0056426_18	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0056426_18	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0056426_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0056426_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0056426_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0056426_18	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0056426_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0056426_19	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0056426_19	Structural annotation	PF07141	NA	NA
UHGV-0056426_21	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0056426_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0056426_21	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0056426_21	eggNOG-mapper	394503.Ccel_0204	Transcription termination factor nusG	NA
UHGV-0056426_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0056426_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0056426_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0056426_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0056426_22	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0056426_22	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0056426_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0056426_22	Structural annotation	PF11985	NA	NA
UHGV-0056426_23	PHROG	phrog_25462	NA	unknown function
UHGV-0056426_23	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0056426_23	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0056426_23	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0056426_24	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0056426_25	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0056426_25	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0056426_25	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0056426_26	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0056426_26	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0056426_26	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0056426_26	Structural annotation	PF06252	NA	NA
UHGV-0056426_27	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0056426_27	AcrCatalog	cluster_71843	NA	NA
UHGV-0056426_28	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0056426_28	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0056426_28	eggNOG-mapper	645991.Sgly_0173	Transcriptional regulator, AbrB family	NA
UHGV-0056426_28	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0056426_28	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0056426_31	PHROG	phrog_4292	NA	unknown function
UHGV-0056426_31	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0056426_32	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0056426_32	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0056426_32	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0056426_32	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0056426_32	Pfam	PF13401	AAA domain	AAA_22
UHGV-0056426_32	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0056426_32	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0056426_33	PHROG	phrog_310	transposase	integration and excision
UHGV-0056426_33	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0056426_33	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0056426_33	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0056426_33	Pfam	PF00665	Integrase core domain	rve
UHGV-0056426_33	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0056426_33	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0056426_33	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0056426_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0056426_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0056426_36	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0056426_36	eggNOG-mapper	657322.FPR_24330	DNA-binding helix-turn-helix protein	NA
UHGV-0056426_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056426_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056426_36	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-0056426_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0056426_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0056426_37	UniRef90	UniRef90_A0A6N4APD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0056426_37	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0056426_37	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0056426_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0056426_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0056426_37	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0056426_38	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0056426_38	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0056426_38	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-0056426_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0056426_38	COG	COG2369	NA	NA