UHGV-0056546

Genome information

Genome length 31,049 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056546
vOTU ID	vOTU-045005
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_48452
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.44
Jumbo phage	No

Genome content
Genome length	31,049 bps
GC content	41.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.73%
Average CDS length	618.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056546_1	Structural annotation	COG1321	NA	NA
UHGV-0056546_3	PHROG	phrog_14088	NA	unknown function
UHGV-0056546_3	UniRef90	UniRef90_M9LIB6	Membrane carboxypeptidase	NA
UHGV-0056546_3	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0056546_4	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0056546_4	UniRef90	UniRef90_UPI00156E7345	NA	NA
UHGV-0056546_4	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0056546_4	Structural annotation	PF06573	NA	NA
UHGV-0056546_7	PHROG	phrog_3777	NA	unknown function
UHGV-0056546_7	UniRef90	UniRef90_A0A3E4GMR6	NA	NA
UHGV-0056546_7	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0056546_7	Pfam	PF12957	NA	DUF3846
UHGV-0056546_7	Structural annotation	PF12957	NA	NA
UHGV-0056546_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0056546_8	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0056546_8	Structural annotation	PF01446	NA	NA
UHGV-0056546_9	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0056546_9	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0056546_9	UniRef90	UniRef90_A0A174HML3	Ribonuclease H	NA
UHGV-0056546_9	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0056546_9	Pfam	PF00075	RNase H	RNase_H
UHGV-0056546_9	COG	COG0328	Ribonuclease HI	NA
UHGV-0056546_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0056546_10	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0056546_10	UniRef90	UniRef90_A0A174HNH0	Probable chromosome-partitioning protein parB	NA
UHGV-0056546_10	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0056546_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0056546_10	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0056546_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0056546_10	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0056546_12	PHROG	phrog_7566	NA	unknown function
UHGV-0056546_12	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0056546_13	UniRef90	UniRef90_UPI000E4AEE34	NA	NA
UHGV-0056546_13	eggNOG-mapper	411460.RUMTOR_01556	NA	NA
UHGV-0056546_13	Pfam	PF14199	NA	DUF4317
UHGV-0056546_13	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0056546_14	Structural annotation	PF17516, NF037951	NA	NA
UHGV-0056546_18	UniRef90	UniRef90_A0A1C5X6R0	YopX protein	NA
UHGV-0056546_18	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0056546_19	PHROG	phrog_15198	NA	unknown function
UHGV-0056546_19	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0056546_19	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0056546_19	Pfam	PF04448	NA	DUF551
UHGV-0056546_20	PHROG	phrog_6568	NA	unknown function
UHGV-0056546_20	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0056546_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0056546_21	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-0056546_21	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0056546_21	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0056546_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0056546_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056546_22	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0056546_22	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0056546_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0056546_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0056546_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0056546_23	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0056546_23	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0056546_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0056546_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0056546_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0056546_24	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0056546_24	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0056546_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0056546_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0056546_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0056546_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0056546_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0056546_25	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0056546_25	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0056546_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0056546_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0056546_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0056546_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0056546_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0056546_26	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0056546_26	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0056546_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0056546_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0056546_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0056546_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0056546_27	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0056546_27	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0056546_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0056546_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0056546_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0056546_27	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0056546_29	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0056546_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0056546_30	Structural annotation	PF05657	NA	NA
UHGV-0056546_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0056546_31	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0056546_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0056546_31	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0056546_32	PHROG	phrog_88	major tail protein	tail
UHGV-0056546_32	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0056546_32	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0056546_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0056546_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0056546_34	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0056546_34	PHROG	phrog_23464	NA	unknown function
UHGV-0056546_34	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-0056546_34	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0056546_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0056546_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0056546_35	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0056546_35	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0056546_35	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0056546_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0056546_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0056546_36	PHROG	phrog_13289	tail protein	tail
UHGV-0056546_36	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0056546_36	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0056546_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0056546_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0056546_36	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0056546_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0056546_37	PHROG	phrog_14030	NA	unknown function
UHGV-0056546_37	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0056546_37	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0056546_37	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0056546_37	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0056546_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0056546_37	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0056546_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0056546_39	UniRef90	UniRef90_UPI00156FC490	SGNH/GDSL hydrolase family protein	NA
UHGV-0056546_39	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0056546_39	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0056546_40	Structural annotation	PF00041	NA	NA
UHGV-0056546_42	PHROG	phrog_17147	NA	unknown function
UHGV-0056546_42	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0056546_42	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0056546_43	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0056546_43	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0056546_43	UniRef90	UniRef90_UPI00156F87C5	RNA-directed DNA polymerase	NA
UHGV-0056546_43	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0056546_43	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0056546_43	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0056546_43	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0056546_43	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0056546_45	PHROG	phrog_28526	NA	unknown function
UHGV-0056546_45	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0056546_45	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0056546_45	Pfam	PF04255	NA	DUF433
UHGV-0056546_46	PHROG	phrog_4105	NA	unknown function
UHGV-0056546_46	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0056546_47	PHROG	phrog_1129	holin	lysis
UHGV-0056546_47	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0056546_47	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0056546_47	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0056546_47	Structural annotation	PF16079	NA	NA