UHGV-0056722

Genome information

Genome length 28,600 bps

CDS count 47

Completeness 50.11% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056722
vOTU ID	vOTU-034474
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_32429
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.04
Jumbo phage	No

Genome content
Genome length	28,600 bps
GC content	36.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.76%
Average CDS length	562.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056722_1	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056722_1	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0056722_1	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-0056722_1	Structural annotation	PF17375	NA	NA
UHGV-0056722_2	Structural annotation	PF05657	NA	NA
UHGV-0056722_3	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0056722_3	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0056722_4	PHROG	phrog_36112	NA	unknown function
UHGV-0056722_4	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0056722_4	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0056722_4	Structural annotation	PF16478	NA	NA
UHGV-0056722_6	PHROG	phrog_28918	NA	unknown function
UHGV-0056722_6	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0056722_6	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0056722_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0056722_6	Structural annotation	PF20155	NA	NA
UHGV-0056722_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0056722_7	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0056722_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0056722_8	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0056722_9	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0056722_9	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0056722_10	Structural annotation	PF07875	NA	NA
UHGV-0056722_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0056722_11	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0056722_11	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0056722_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0056722_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0056722_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0056722_11	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0056722_12	PHROG	phrog_1194	NA	unknown function
UHGV-0056722_12	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0056722_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0056722_13	PHROG	phrog_1401	NA	unknown function
UHGV-0056722_13	Structural annotation	PF07761	NA	NA
UHGV-0056722_14	PHROG	phrog_16267	NA	unknown function
UHGV-0056722_14	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0056722_14	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0056722_14	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0056722_14	COG	COG4926	Phage-related protein	NA
UHGV-0056722_14	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0056722_15	PHROG	phrog_2566	NA	unknown function
UHGV-0056722_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0056722_16	PHROG	phrog_291	endolysin	lysis
UHGV-0056722_16	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0056722_16	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0056722_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0056722_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0056722_16	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0056722_17	Structural annotation	PF13108	NA	NA
UHGV-0056722_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0056722_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0056722_18	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0056722_18	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0056722_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0056722_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056722_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056722_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0056722_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0056722_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0056722_22	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0056722_22	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0056722_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0056722_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0056722_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0056722_22	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0056722_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0056722_24	Structural annotation	PF10552	NA	NA
UHGV-0056722_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0056722_26	PHROG	phrog_26861	NA	unknown function
UHGV-0056722_26	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0056722_26	eggNOG-mapper	97138.C820_01677	PFAM single-strand binding protein	NA
UHGV-0056722_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0056722_26	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0056722_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0056722_26	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0056722_28	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0056722_28	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056722_28	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0056722_28	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0056722_28	Pfam	PF13476	AAA domain	AAA_23
UHGV-0056722_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0056722_28	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0056722_30	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0056722_30	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0056722_30	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0056722_30	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0056722_30	Pfam	PF03837	RecT family	RecT
UHGV-0056722_30	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0056722_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0056722_30	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0056722_32	PHROG	phrog_25456	NA	unknown function
UHGV-0056722_34	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0056722_34	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0056722_34	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0056722_34	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0056722_34	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0056722_34	dbAPIS	APIS058	NA	NA
UHGV-0056722_34	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0056722_34	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0056722_35	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0056722_37	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0056722_37	eggNOG-mapper	1408423.JHYA01000024_gene1215	NA	NA
UHGV-0056722_37	Pfam	PF07866	NA	DUF1653
UHGV-0056722_37	COG	COG4728	NA	NA
UHGV-0056722_37	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0056722_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0056722_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0056722_39	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0056722_39	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0056722_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0056722_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0056722_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0056722_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0056722_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0056722_40	PHROG	phrog_10714	NA	unknown function
UHGV-0056722_40	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0056722_40	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0056722_42	PHROG	phrog_19106	NA	unknown function
UHGV-0056722_42	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0056722_42	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0056722_42	Structural annotation	TIGR01453	NA	NA
UHGV-0056722_44	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0056722_44	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0056722_44	AcrCatalog	cluster_47493	NA	NA
UHGV-0056722_44	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0056722_46	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056722_46	UniRef90	UniRef90_UPI0012F2B86D	HNH endonuclease	NA
UHGV-0056722_46	eggNOG-mapper	1129192.A0A0E3D9U2_9CAUD	endonuclease activity	NA
UHGV-0056722_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0056722_46	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0056722_47	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0056722_47	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0056722_47	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0056722_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0056722_47	Structural annotation	PF09681, MF_01819, TIGR01714, COG1846	NA	NA