UHGV-0056752

Genome information

Genome length 35,049 bps

CDS count 64

Completeness 95.76% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056752
vOTU ID	vOTU-072172
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_35538
BioSample	SAMEA2154992
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.93
Jumbo phage	No

Genome content
Genome length	35,049 bps
GC content	29.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.90%
Average CDS length	501.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056752_1	KOfam	K09698	gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]	NA
UHGV-0056752_1	PHROG	phrog_35649	NA	unknown function
UHGV-0056752_1	UniRef90	UniRef90_R6QD54	Glutamate--tRNA ligase	NA
UHGV-0056752_1	eggNOG-mapper	1391647.AVSV01000011_gene1166	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	NA
UHGV-0056752_1	Pfam	PF00749	tRNA synthetases class I (E and Q), catalytic domain	tRNA-synt_1c
UHGV-0056752_1	NCBIFam	TIGR00464.1	glutamate--tRNA ligase	NA
UHGV-0056752_1	COG	COG0008	Glutamyl- or glutaminyl-tRNA synthetase	NA
UHGV-0056752_4	PHROG	phrog_9589	endolysin	lysis
UHGV-0056752_4	UniRef90	UniRef90_UPI000B195CAC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0056752_4	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0056752_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0056752_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0056752_4	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0056752_5	PHROG	phrog_881	holin	lysis
UHGV-0056752_5	UniRef90	UniRef90_A0A1I7JG50	Putative phage holin Dp-1	NA
UHGV-0056752_5	eggNOG-mapper	1140001.I571_01849	Putative phage holin Dp-1	NA
UHGV-0056752_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0056752_5	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0056752_6	PHROG	phrog_1863	NA	unknown function
UHGV-0056752_6	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0056752_8	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0056752_8	UniRef90	UniRef90_A0A8G7NN96	Phage tail protein	NA
UHGV-0056752_8	eggNOG-mapper	1121271.AUCM01000007_gene3802	NA	NA
UHGV-0056752_9	Structural annotation	PF03906	NA	NA
UHGV-0056752_10	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0056752_10	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-0056752_10	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0056752_10	COG	COG4926	Phage-related protein	NA
UHGV-0056752_13	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0056752_13	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0056752_13	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0056752_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0056752_14	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0056752_14	COG	COG4926	Phage-related protein	NA
UHGV-0056752_14	Structural annotation	PF21683, TIGR02126, COG5437	NA	NA
UHGV-0056752_15	PHROG	phrog_1194	NA	unknown function
UHGV-0056752_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0056752_16	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0056752_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0056752_16	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0056752_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0056752_16	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0056752_17	PHROG	phrog_26645	NA	unknown function
UHGV-0056752_17	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0056752_17	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0056752_17	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0056752_17	COG	COG3103	NA	NA
UHGV-0056752_17	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0056752_19	Structural annotation	PF12363	NA	NA
UHGV-0056752_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0056752_21	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0056752_21	Structural annotation	PF05657	NA	NA
UHGV-0056752_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0056752_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0056752_26	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0056752_26	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0056752_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0056752_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0056752_26	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0056752_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0056752_27	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0056752_27	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0056752_27	Pfam	PF14265	NA	DUF4355
UHGV-0056752_27	Structural annotation	PF14265	NA	NA
UHGV-0056752_30	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0056752_30	COG	COG2369	NA	NA
UHGV-0056752_30	Structural annotation	TIGR01641	NA	NA
UHGV-0056752_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0056752_31	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0056752_31	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0056752_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0056752_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0056752_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0056752_32	UniRef90	UniRef90_R7ITA5	Putative terminase large subunit	NA
UHGV-0056752_32	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-0056752_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0056752_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0056752_32	COG	COG5410	NA	NA
UHGV-0056752_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0056752_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0056752_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0056752_33	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0056752_33	eggNOG-mapper	469618.FVAG_01302	Terminase small subunit	NA
UHGV-0056752_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0056752_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0056752_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0056752_34	PHROG	phrog_1233	NA	unknown function
UHGV-0056752_36	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0056752_41	PHROG	phrog_8684	NA	unknown function
UHGV-0056752_41	UniRef90	UniRef90_R6N530	NA	NA
UHGV-0056752_41	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0056752_41	Pfam	PF09643	YopX protein	YopX
UHGV-0056752_41	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0056752_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0056752_42	Structural annotation	PF02699, TIGR00739, COG1862	NA	NA
UHGV-0056752_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0056752_43	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0056752_43	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0056752_43	Pfam	PF06356	NA	DUF1064
UHGV-0056752_43	Structural annotation	PF06356	NA	NA
UHGV-0056752_46	PHROG	phrog_1123	NA	unknown function
UHGV-0056752_46	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-0056752_46	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0056752_46	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0056752_47	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0056752_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0056752_47	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-0056752_47	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0056752_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0056752_47	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0056752_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0056752_47	Structural annotation	PF07261, PF09681, MF_01177, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-0056752_50	PHROG	phrog_7566	NA	unknown function
UHGV-0056752_50	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0056752_51	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0056752_51	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0056752_51	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0056752_51	Structural annotation	PF05772	NA	NA
UHGV-0056752_52	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0056752_52	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0056752_52	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0056752_53	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0056752_53	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0056752_53	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0056752_53	Pfam	PF06378	NA	DUF1071
UHGV-0056752_53	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0056752_54	Structural annotation	PF09943, COG3461	NA	NA
UHGV-0056752_59	PHROG	phrog_6058	NA	unknown function
UHGV-0056752_59	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0056752_60	UniRef90	UniRef90_UPI00189D0CCD	XRE family transcriptional regulator	NA
UHGV-0056752_60	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0056752_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0056752_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0056752_61	UniRef90	UniRef90_UPI001D093873	helix-turn-helix domain-containing protein	NA
UHGV-0056752_61	eggNOG-mapper	290402.Cbei_0886	transcriptional regulator	NA
UHGV-0056752_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0056752_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056752_61	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0056752_62	PHROG	phrog_87	metallo-protease	other
UHGV-0056752_62	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0056752_62	eggNOG-mapper	573061.Clocel_2457	Zn peptidase	NA
UHGV-0056752_62	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0056752_62	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0056752_62	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0056752_63	KOfam	K14059	int; integrase	NA
UHGV-0056752_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0056752_63	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-0056752_63	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-0056752_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0056752_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0056752_63	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0056752_64	KOfam	K12574	rnj; ribonuclease J [EC:3.1.-.-]	NA
UHGV-0056752_64	UniRef90	UniRef90_A0A352MVG0	RNase_J_C domain-containing protein	NA
UHGV-0056752_64	eggNOG-mapper	398512.JQKC01000009_gene411	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay	NA
UHGV-0056752_64	Pfam	PF17770	Ribonuclease J C-terminal domain	RNase_J_C
UHGV-0056752_64	COG	COG0595	mRNA degradation ribonuclease J1/J2	NA