UHGV-0056993

Genome information

Genome length 23,605 bps

CDS count 30

Completeness 69.09% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0056993
vOTU ID	vOTU-034350
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52665
BioSample	SAMEA2142349
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.04
Jumbo phage	No

Genome content
Genome length	23,605 bps
GC content	59.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.18%
Average CDS length	730.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0056993_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0056993_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0056993_1	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0056993_1	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0056993_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0056993_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0056993_1	COG	COG0863	DNA modification methylase	NA
UHGV-0056993_1	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0056993_2	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0056993_2	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0056993_2	UniRef90	UniRef90_A0A7W1G2G8	Methyltransferase	NA
UHGV-0056993_2	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0056993_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0056993_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0056993_2	COG	COG0863	DNA modification methylase	NA
UHGV-0056993_3	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0056993_3	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0056993_3	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0056993_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0056993_3	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0056993_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0056993_4	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0056993_4	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0056993_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0056993_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0056993_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0056993_4	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0056993_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0056993_5	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0056993_5	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0056993_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0056993_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0056993_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0056993_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0056993_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0056993_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0056993_6	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0056993_6	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0056993_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0056993_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0056993_6	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0056993_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0056993_7	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0056993_7	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0056993_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0056993_7	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0056993_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0056993_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0056993_7	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0056993_8	PHROG	phrog_749	NA	unknown function
UHGV-0056993_8	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0056993_8	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0056993_9	PHROG	phrog_19734	NA	unknown function
UHGV-0056993_9	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0056993_9	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0056993_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0056993_10	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0056993_10	Structural annotation	PF05657	NA	NA
UHGV-0056993_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0056993_11	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0056993_11	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0056993_11	Structural annotation	TIGR01725	NA	NA
UHGV-0056993_12	PHROG	phrog_88	major tail protein	tail
UHGV-0056993_12	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0056993_12	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0056993_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0056993_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0056993_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0056993_15	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0056993_15	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0056993_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0056993_15	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0056993_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0056993_16	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0056993_16	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0056993_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0056993_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0056993_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0056993_17	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0056993_17	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0056993_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0056993_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0056993_17	COG	COG4926	Phage-related protein	NA
UHGV-0056993_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0056993_19	UniRef90	UniRef90_A0A417BX67	Chitin-binding type-3 domain-containing protein	NA
UHGV-0056993_19	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-0056993_20	PHROG	phrog_4105	NA	unknown function
UHGV-0056993_20	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0056993_20	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0056993_21	PHROG	phrog_881	holin	lysis
UHGV-0056993_21	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0056993_21	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0056993_21	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0056993_21	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0056993_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0056993_22	PHROG	phrog_1493	endolysin	lysis
UHGV-0056993_22	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0056993_22	eggNOG-mapper	411473.RUMCAL_02267	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0056993_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0056993_22	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0056993_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0056993_22	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0056993_23	KOfam	K14059	int; integrase	NA
UHGV-0056993_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0056993_23	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0056993_23	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0056993_23	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0056993_23	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0056993_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0056993_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0056993_23	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0056993_24	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0056993_24	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0056993_26	eggNOG-mapper	1410632.JHWW01000002_gene1987	TM2 domain	NA
UHGV-0056993_26	Pfam	PF05154	TM2 domain	TM2
UHGV-0056993_26	COG	COG2314	NA	NA
UHGV-0056993_26	Structural annotation	PF08797, PF01668, TIGR00086, COG0691	NA	NA
UHGV-0056993_27	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0056993_27	eggNOG-mapper	1226322.HMPREF1545_02463	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0056993_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0056993_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0056993_27	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0056993_29	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-0056993_30	KOfam	K06408	spoVAF; stage V sporulation protein AF	NA
UHGV-0056993_30	UniRef90	UniRef90_A0A3C0X1I5	Spore germination protein (Fragment)	NA
UHGV-0056993_30	eggNOG-mapper	1232449.BAHV02000001_gene494	NA	NA
UHGV-0056993_30	Pfam	PF03323	Bacillus/Clostridium GerA spore germination protein	GerA
UHGV-0056993_30	COG	COG0697	Permease of the drug/metabolite transporter (DMT) superfamily	NA