UHGV-0057191

Genome information

Genome length 41,600 bps

CDS count 53

Completeness 97.71% (high-quality)

geNomad score 0.9625

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057191
vOTU ID	vOTU-061203
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63506
BioSample	SAMEA2338854
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9625
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.97
Jumbo phage	No

Genome content
Genome length	41,600 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.00%
Average CDS length	693.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057191_1	PHROG	phrog_17690	NA	unknown function
UHGV-0057191_1	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0057191_1	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0057191_3	UniRef90	UniRef90_A0A415UCM6	NA	NA
UHGV-0057191_3	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0057191_3	Pfam	PF04448	NA	DUF551
UHGV-0057191_5	PHROG	phrog_6568	NA	unknown function
UHGV-0057191_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0057191_6	UniRef90	UniRef90_UPI001F372FD7	sigma-70 region 4 domain-containing protein	NA
UHGV-0057191_6	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0057191_6	Structural annotation	PF02996	NA	NA
UHGV-0057191_8	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0057191_8	UniRef90	UniRef90_A0A415UCQ6	Terminase	NA
UHGV-0057191_8	eggNOG-mapper	1120998.AUFC01000030_gene2230	DNA packaging	NA
UHGV-0057191_8	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0057191_8	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0057191_8	COG	COG5484	NA	NA
UHGV-0057191_8	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0057191_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0057191_9	PHROG	phrog_10250	NA	unknown function
UHGV-0057191_9	UniRef90	UniRef90_A0A415UCP7	PBSX family phage terminase large subunit	NA
UHGV-0057191_9	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0057191_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0057191_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0057191_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0057191_9	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0057191_10	UniRef90	UniRef90_UPI001ADDDCFE	CopG family transcriptional regulator	NA
UHGV-0057191_10	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0057191_12	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057191_12	UniRef90	UniRef90_UPI001ADDCCE4	HNH endonuclease	NA
UHGV-0057191_12	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-0057191_12	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0057191_12	Structural annotation	PF13392, PF10013, COG4068	NA	NA
UHGV-0057191_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0057191_13	UniRef90	UniRef90_A0A415G5I2	Phage capsid protein	NA
UHGV-0057191_13	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0057191_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0057191_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0057191_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0057191_14	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0057191_15	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0057191_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0057191_15	UniRef90	UniRef90_A0A415UCR3	Phage capsid protein	NA
UHGV-0057191_15	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0057191_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0057191_15	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0057191_15	COG	COG2369	NA	NA
UHGV-0057191_15	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0057191_17	PHROG	phrog_24129	NA	unknown function
UHGV-0057191_17	UniRef90	UniRef90_W6NHA7	Antirepressor [Bacteriophage A118]	NA
UHGV-0057191_17	eggNOG-mapper	1298920.KI911353_gene2074	BRO family, N-terminal domain	NA
UHGV-0057191_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0057191_18	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0057191_18	UniRef90	UniRef90_A0A415G5D8	Bro-N domain-containing protein	NA
UHGV-0057191_18	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0057191_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0057191_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0057191_19	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0057191_19	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0057191_19	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0057191_19	Structural annotation	PF14359	NA	NA
UHGV-0057191_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0057191_20	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0057191_20	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0057191_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0057191_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0057191_21	PHROG	phrog_247	major head protein	head and packaging
UHGV-0057191_21	UniRef90	UniRef90_A0A415UCN2	Phage coat protein	NA
UHGV-0057191_21	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0057191_21	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0057191_21	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0057191_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0057191_22	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0057191_22	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0057191_23	PHROG	phrog_3366	NA	unknown function
UHGV-0057191_23	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0057191_23	Pfam	PF20536	NA	DUF6751
UHGV-0057191_23	Structural annotation	PF20536	NA	NA
UHGV-0057191_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0057191_24	UniRef90	UniRef90_A0A415UCL3	Capsid protein	NA
UHGV-0057191_24	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0057191_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0057191_24	Structural annotation	PF11114	NA	NA
UHGV-0057191_25	PHROG	phrog_3266	tail completion	connector
UHGV-0057191_25	UniRef90	UniRef90_A0A415UCP6	Chloramphenicol resistance protein	NA
UHGV-0057191_25	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0057191_25	Structural annotation	PF12691	NA	NA
UHGV-0057191_26	PHROG	phrog_3099	NA	unknown function
UHGV-0057191_26	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0057191_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0057191_27	PHROG	phrog_4450	NA	unknown function
UHGV-0057191_27	eggNOG-mapper	411490.ANACAC_00770	NA	NA
UHGV-0057191_27	Structural annotation	PF20378	NA	NA
UHGV-0057191_28	PHROG	phrog_706	NA	unknown function
UHGV-0057191_28	UniRef90	UniRef90_B0MAY5	Bacteriophage Gp15 protein	NA
UHGV-0057191_28	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0057191_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0057191_28	Structural annotation	PF06854	NA	NA
UHGV-0057191_29	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0057191_29	PHROG	phrog_19074	NA	unknown function
UHGV-0057191_29	UniRef90	UniRef90_A0A415UCW1	Phage tail tape measure protein	NA
UHGV-0057191_29	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0057191_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0057191_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0057191_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0057191_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0057191_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0057191_30	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0057191_30	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0057191_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0057191_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0057191_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0057191_30	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0057191_31	PHROG	phrog_3558	tail protein	tail
UHGV-0057191_31	UniRef90	UniRef90_A0A415UCM3	Prophage_tail domain-containing protein	NA
UHGV-0057191_31	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0057191_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0057191_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0057191_31	COG	COG4926	Phage-related protein	NA
UHGV-0057191_31	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0057191_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0057191_33	PHROG	phrog_16164	NA	unknown function
UHGV-0057191_33	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0057191_33	Structural annotation	PF10651	NA	NA
UHGV-0057191_34	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-0057191_34	PHROG	phrog_17147	NA	unknown function
UHGV-0057191_34	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0057191_34	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0057191_35	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0057191_35	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0057191_35	UniRef90	UniRef90_A0A174K662	Retron-type reverse transcriptase	NA
UHGV-0057191_35	eggNOG-mapper	478749.BRYFOR_08556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0057191_35	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0057191_35	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0057191_35	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0057191_35	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0057191_36	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0057191_37	PHROG	phrog_1382	NA	unknown function
UHGV-0057191_37	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0057191_38	Structural annotation	PF00041, NF038367	NA	NA
UHGV-0057191_40	PHROG	phrog_37799	NA	unknown function
UHGV-0057191_40	UniRef90	UniRef90_A0A174K913	Phage-related holin (Lysis protein)	NA
UHGV-0057191_40	eggNOG-mapper	1151292.QEW_0990	Bacteriophage holin family	NA
UHGV-0057191_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0057191_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0057191_40	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0057191_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0057191_41	KOfam	K07273	acm; lysozyme	NA
UHGV-0057191_41	PHROG	phrog_291	endolysin	lysis
UHGV-0057191_41	UniRef90	UniRef90_A0A174K8T9	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0057191_41	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0057191_41	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0057191_41	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0057191_41	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0057191_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0057191_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0057191_42	UniRef90	UniRef90_A0A415G5D9	Tyr recombinase domain-containing protein	NA
UHGV-0057191_42	eggNOG-mapper	411469.EUBHAL_02005	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0057191_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057191_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057191_43	KOfam	K14059	int; integrase	NA
UHGV-0057191_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0057191_43	UniRef90	UniRef90_A0A173S373	Site-specific tyrosine recombinase XerC	NA
UHGV-0057191_43	eggNOG-mapper	411469.EUBHAL_02005	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0057191_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0057191_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057191_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057191_43	Structural annotation	PF14659, PF12286, MF_01808, NF007246, COG4973	NA	NA
UHGV-0057191_44	PHROG	phrog_13260	NA	unknown function
UHGV-0057191_44	UniRef90	UniRef90_UPI000BF232A4	FunZ	NA
UHGV-0057191_44	eggNOG-mapper	411469.EUBHAL_02004	NA	NA
UHGV-0057191_44	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-0057191_45	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0057191_45	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057191_45	UniRef90	UniRef90_C0EX62	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-0057191_45	eggNOG-mapper	411469.EUBHAL_02003	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0057191_45	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0057191_45	COG	COG4748	NA	NA
UHGV-0057191_45	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0057191_46	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0057191_46	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057191_46	eggNOG-mapper	411469.EUBHAL_02002	type I restriction enzyme	NA
UHGV-0057191_46	COG	COG4748	NA	NA
UHGV-0057191_47	PHROG	phrog_1847	NA	unknown function
UHGV-0057191_47	UniRef90	UniRef90_A0A174FFT3	T5orf172 domain	NA
UHGV-0057191_47	eggNOG-mapper	411469.EUBHAL_02001	T5orf172	NA
UHGV-0057191_47	Pfam	PF13250	NA	DUF4041
UHGV-0057191_47	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0057191_47	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0057191_47	Structural annotation	PF13250	NA	NA
UHGV-0057191_48	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0057191_49	eggNOG-mapper	1220589.CD32_16955	Zn peptidase	NA
UHGV-0057191_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0057191_50	UniRef90	UniRef90_UPI001D002C2A	NA	NA
UHGV-0057191_50	eggNOG-mapper	411469.EUBHAL_01996	NA	NA
UHGV-0057191_51	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0057191_51	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0057191_51	UniRef90	UniRef90_A0A174FGC3	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0057191_51	eggNOG-mapper	411469.EUBHAL_01995	Addiction module toxin, RelE StbE family	NA
UHGV-0057191_51	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0057191_51	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0057191_52	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0057191_52	UniRef90	UniRef90_A0A173S2A0	HTH cro/C1-type domain-containing protein	NA
UHGV-0057191_52	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0057191_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0057191_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0057191_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0057191_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0057191_53	UniRef90	UniRef90_A0A173S213	HTH-type transcriptional regulator immR	NA
UHGV-0057191_53	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057191_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0057191_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057191_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057191_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA