UHGV-0057349

Genome information

Genome length 39,105 bps

CDS count 64

Completeness 93.58% (high-quality)

geNomad score 0.9665

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057349
vOTU ID	vOTU-079221
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55305
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9665
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	89.04
Jumbo phage	No

Genome content
Genome length	39,105 bps
GC content	44.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	95.07%
Average CDS length	583.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057349_1	KOfam	K14059	int; integrase	NA
UHGV-0057349_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0057349_1	UniRef90	UniRef90_R7BBQ9	Prophage LambdaBa02 site-specific recombinase phage integrase family	NA
UHGV-0057349_1	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0057349_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0057349_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0057349_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057349_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057349_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0057349_2	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0057349_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0057349_2	Structural annotation	PF06114	NA	NA
UHGV-0057349_3	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0057349_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057349_3	UniRef90	UniRef90_R5ADP7	HTH cro/C1-type domain-containing protein	NA
UHGV-0057349_3	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0057349_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057349_3	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0057349_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0057349_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057349_4	UniRef90	UniRef90_A0A355NM61	XRE family transcriptional regulator	NA
UHGV-0057349_4	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0057349_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057349_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0057349_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0057349_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0057349_7	UniRef90	UniRef90_UPI0011067F2A	phage antirepressor	NA
UHGV-0057349_7	eggNOG-mapper	1280706.AUJE01000003_gene2202	BRO family, N-terminal domain	NA
UHGV-0057349_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0057349_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0057349_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0057349_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0057349_9	UniRef90	UniRef90_A0A0D8I7B2	HTH_17 domain-containing protein	NA
UHGV-0057349_9	eggNOG-mapper	1029718.SFBM_0098	Helix-turn-helix domain	NA
UHGV-0057349_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0057349_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0057349_13	PHROG	phrog_21613	NA	unknown function
UHGV-0057349_13	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0057349_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0057349_14	PHROG	phrog_1499	NA	unknown function
UHGV-0057349_14	UniRef90	UniRef90_A0A374HKI1	AAA_23 domain-containing protein	NA
UHGV-0057349_14	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0057349_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0057349_14	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0057349_14	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0057349_15	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057349_15	UniRef90	UniRef90_UPI00041F978E	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0057349_15	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0057349_15	Pfam	PF12684	NA	DUF3799
UHGV-0057349_15	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0057349_15	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0057349_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0057349_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0057349_16	UniRef90	UniRef90_A0A7X8EQS1	Single-stranded DNA-binding protein	NA
UHGV-0057349_16	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0057349_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0057349_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0057349_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0057349_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0057349_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0057349_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0057349_17	UniRef90	UniRef90_A0A2K3JBB6	ERCC4 domain-containing protein	NA
UHGV-0057349_17	eggNOG-mapper	397291.C804_06336	ERCC4 domain	NA
UHGV-0057349_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0057349_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0057349_18	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0057349_18	UniRef90	UniRef90_A0A847VZF6	NA	NA
UHGV-0057349_18	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0057349_18	Pfam	PF06048	NA	DUF927
UHGV-0057349_18	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0057349_18	COG	COG5519	NA	NA
UHGV-0057349_18	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0057349_22	PHROG	phrog_13489	NA	unknown function
UHGV-0057349_22	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0057349_24	PHROG	phrog_8684	NA	unknown function
UHGV-0057349_24	UniRef90	UniRef90_UPI001411DA8D	YopX family protein	NA
UHGV-0057349_24	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0057349_24	Pfam	PF09643	YopX protein	YopX
UHGV-0057349_24	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0057349_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0057349_27	PHROG	phrog_6568	NA	unknown function
UHGV-0057349_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0057349_28	UniRef90	UniRef90_A0A352BM05	Sigma70_r4 domain-containing protein	NA
UHGV-0057349_28	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0057349_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0057349_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0057349_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0057349_29	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0057349_29	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0057349_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0057349_29	Structural annotation	PF16677	NA	NA
UHGV-0057349_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0057349_30	PHROG	phrog_10250	NA	unknown function
UHGV-0057349_30	UniRef90	UniRef90_A0A1Y4L2U5	Terminase_3 domain-containing protein	NA
UHGV-0057349_30	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0057349_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0057349_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0057349_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0057349_31	KOfam	K09961	NA	NA
UHGV-0057349_31	PHROG	phrog_146	portal protein	head and packaging
UHGV-0057349_31	UniRef90	UniRef90_G9YWD9	Phage-associated protein, HI1409 family	NA
UHGV-0057349_31	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0057349_31	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0057349_31	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0057349_31	COG	COG3567	NA	NA
UHGV-0057349_31	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0057349_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0057349_32	UniRef90	UniRef90_A0A316RHV0	Minor capsid protein	NA
UHGV-0057349_32	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0057349_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0057349_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0057349_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057349_33	PHROG	phrog_8857	NA	unknown function
UHGV-0057349_34	PHROG	phrog_29883	NA	unknown function
UHGV-0057349_34	UniRef90	UniRef90_A0A1Y4L8M4	Rubrerythrin domain-containing protein	NA
UHGV-0057349_35	KOfam	K09960	NA	NA
UHGV-0057349_35	PHROG	phrog_16985	NA	unknown function
UHGV-0057349_35	UniRef90	UniRef90_UPI00164BF670	NA	NA
UHGV-0057349_35	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-0057349_35	Pfam	PF09979	NA	DUF2213
UHGV-0057349_35	COG	COG3566	NA	NA
UHGV-0057349_35	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0057349_36	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0057349_36	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0057349_36	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0057349_36	eggNOG-mapper	742738.HMPREF9460_02513	NA	NA
UHGV-0057349_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0057349_36	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0057349_36	Structural annotation	PF09956	NA	NA
UHGV-0057349_37	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0057349_37	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0057349_37	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0057349_37	Structural annotation	PF09956	NA	NA
UHGV-0057349_38	PHROG	phrog_264	major head protein	head and packaging
UHGV-0057349_38	UniRef90	UniRef90_UPI00164AAF0B	NA	NA
UHGV-0057349_38	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0057349_38	Pfam	PF09950	NA	DUF2184
UHGV-0057349_38	COG	COG4834	NA	NA
UHGV-0057349_38	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0057349_39	PHROG	phrog_29824	NA	unknown function
UHGV-0057349_40	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0057349_40	UniRef90	UniRef90_UPI0012DE5897	NA	NA
UHGV-0057349_40	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0057349_40	Pfam	PF13262	NA	DUF4054
UHGV-0057349_40	Structural annotation	PF13262	NA	NA
UHGV-0057349_41	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0057349_41	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0057349_42	UniRef90	UniRef90_UPI00164CB61C	HK97 gp10 family phage protein	NA
UHGV-0057349_42	eggNOG-mapper	398512.JQKC01000052_gene2665	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0057349_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0057349_42	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0057349_43	PHROG	phrog_525	NA	unknown function
UHGV-0057349_43	Pfam	PF20765	NA	DUF6838
UHGV-0057349_43	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0057349_44	PHROG	phrog_30826	NA	unknown function
UHGV-0057349_45	PHROG	phrog_279	tail sheath	tail
UHGV-0057349_45	UniRef90	UniRef90_A0A1Y4L2W8	Phage tail sheath protein	NA
UHGV-0057349_45	eggNOG-mapper	742738.HMPREF9460_02522	Phage tail sheath C-terminal domain	NA
UHGV-0057349_45	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0057349_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0057349_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0057349_45	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0057349_46	PHROG	phrog_365	tail protein	tail
UHGV-0057349_46	UniRef90	UniRef90_A0A174V246	Phage-like element PBSX protein xkdM	NA
UHGV-0057349_46	eggNOG-mapper	742738.HMPREF9460_02523	Phage tail tube protein	NA
UHGV-0057349_46	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0057349_46	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0057349_47	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0057349_47	UniRef90	UniRef90_A0A174CUN9	Phage XkdN-like protein	NA
UHGV-0057349_47	eggNOG-mapper	742738.HMPREF9460_02524	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0057349_47	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0057349_47	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0057349_48	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0057349_48	UniRef90	UniRef90_UPI001A9A87F9	tape measure protein	NA
UHGV-0057349_48	eggNOG-mapper	742738.HMPREF9460_02526	tape measure	NA
UHGV-0057349_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0057349_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0057349_48	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0057349_48	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0057349_49	PHROG	phrog_380	endolysin	lysis
UHGV-0057349_49	UniRef90	UniRef90_UPI000B989465	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0057349_49	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-0057349_49	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0057349_49	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0057349_50	KOfam	K06905	NA	NA
UHGV-0057349_50	PHROG	phrog_400	tail protein	tail
UHGV-0057349_50	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0057349_50	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0057349_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0057349_51	PHROG	phrog_579	NA	unknown function
UHGV-0057349_51	UniRef90	UniRef90_UPI001D0F2442	NA	NA
UHGV-0057349_51	eggNOG-mapper	642492.Clole_2743	NA	NA
UHGV-0057349_51	Pfam	PF10844	NA	DUF2577
UHGV-0057349_51	Structural annotation	PF10844, COG0186	NA	NA
UHGV-0057349_52	PHROG	phrog_120	baseplate protein	tail
UHGV-0057349_52	UniRef90	UniRef90_UPI00164C7E68	NA	NA
UHGV-0057349_52	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-0057349_52	Pfam	PF10934	NA	DUF2634
UHGV-0057349_52	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0057349_52	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0057349_53	UniRef90	UniRef90_A0A1Y4UET2	zinc_ribbon_2 domain-containing protein	NA
UHGV-0057349_53	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0057349_54	PHROG	phrog_6	baseplate protein	tail
UHGV-0057349_54	UniRef90	UniRef90_A0A096B737	Baseplate_J domain-containing protein	NA
UHGV-0057349_54	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-0057349_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0057349_54	COG	COG3299	NA	NA
UHGV-0057349_54	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0057349_55	PHROG	phrog_521	tail protein	tail
UHGV-0057349_55	UniRef90	UniRef90_UPI001A9C8D3A	NA	NA
UHGV-0057349_55	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-0057349_55	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0057349_55	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0057349_55	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-0057349_56	PHROG	phrog_30508	NA	unknown function
UHGV-0057349_56	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0057349_60	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0057349_61	eggNOG-mapper	428125.CLOLEP_01418	NA	NA
UHGV-0057349_62	PHROG	phrog_36029	NA	unknown function
UHGV-0057349_62	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0057349_62	eggNOG-mapper	1232449.BAHV02000016_gene1809	NA	NA
UHGV-0057349_63	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0057349_63	UniRef90	UniRef90_R6Q814	NlpC/P60 domain-containing protein	NA
UHGV-0057349_63	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0057349_63	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA