UHGV-0057355

Genome information

Genome length 35,383 bps

CDS count 63

Completeness 70.22% (medium-quality)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057355
vOTU ID	vOTU-035799
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55301
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	70.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.22
Jumbo phage	No

Genome content
Genome length	35,383 bps
GC content	45.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.30%
Average CDS length	511.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057355_1	eggNOG-mapper	1232443.BAIA02000017_gene3285	NA	NA
UHGV-0057355_4	UniRef90	UniRef90_A0A4R4FGD8	XRE family transcriptional regulator	NA
UHGV-0057355_4	eggNOG-mapper	1064535.MELS_1530	sequence-specific DNA binding	NA
UHGV-0057355_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057355_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0057355_4	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0057355_7	eggNOG-mapper	1173029.JH980292_gene3351	NA	NA
UHGV-0057355_8	PHROG	phrog_10390	NA	unknown function
UHGV-0057355_8	UniRef90	UniRef90_A0A6L5YUI9	NA	NA
UHGV-0057355_8	eggNOG-mapper	1123312.KB904580_gene854	NA	NA
UHGV-0057355_8	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0057355_8	COG	COG3600	NA	NA
UHGV-0057355_8	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0057355_9	PHROG	phrog_4105	NA	unknown function
UHGV-0057355_9	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0057355_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0057355_10	PHROG	phrog_435	endolysin	lysis
UHGV-0057355_10	UniRef90	UniRef90_R6F327	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0057355_10	eggNOG-mapper	1321814.HMPREF9089_00944	Ami_3	NA
UHGV-0057355_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0057355_10	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0057355_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0057355_10	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0057355_11	PHROG	phrog_443	holin	lysis
UHGV-0057355_11	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0057355_11	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-0057355_11	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0057355_11	Structural annotation	PF16945	NA	NA
UHGV-0057355_12	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0057355_14	PHROG	phrog_19280	NA	unknown function
UHGV-0057355_14	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0057355_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0057355_15	PHROG	phrog_13289	tail protein	tail
UHGV-0057355_15	UniRef90	UniRef90_R6ERY2	Phage minor structural protein N-terminal region	NA
UHGV-0057355_15	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0057355_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0057355_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0057355_15	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0057355_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0057355_16	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0057355_16	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0057355_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0057355_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0057355_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0057355_17	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0057355_17	PHROG	phrog_23464	NA	unknown function
UHGV-0057355_17	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0057355_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0057355_18	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0057355_18	Structural annotation	PF11836	NA	NA
UHGV-0057355_19	PHROG	phrog_88	major tail protein	tail
UHGV-0057355_19	UniRef90	UniRef90_R6ERX7	Phi13 family phage major tail protein	NA
UHGV-0057355_19	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0057355_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0057355_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0057355_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0057355_20	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0057355_20	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0057355_20	Structural annotation	TIGR01725	NA	NA
UHGV-0057355_21	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0057355_21	Structural annotation	PF05657	NA	NA
UHGV-0057355_22	PHROG	phrog_19734	NA	unknown function
UHGV-0057355_22	UniRef90	UniRef90_R6ETV7	Putative phage head-tail adaptor	NA
UHGV-0057355_22	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0057355_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057355_23	PHROG	phrog_2550	NA	unknown function
UHGV-0057355_23	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0057355_23	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0057355_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0057355_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057355_24	UniRef90	UniRef90_R6ERX1	Phage capsid protein	NA
UHGV-0057355_24	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0057355_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057355_24	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0057355_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057355_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057355_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057355_25	KOfam	K06904	NA	NA
UHGV-0057355_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0057355_25	UniRef90	UniRef90_A0A3D1FL96	HK97 family phage prohead protease	NA
UHGV-0057355_25	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0057355_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0057355_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0057355_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0057355_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0057355_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057355_26	UniRef90	UniRef90_R6FMT3	HK97 family phage portal protein	NA
UHGV-0057355_26	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0057355_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057355_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0057355_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057355_26	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0057355_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057355_27	UniRef90	UniRef90_R6F310	Phage terminase large subunit	NA
UHGV-0057355_27	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0057355_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057355_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057355_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057355_27	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0057355_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0057355_28	UniRef90	UniRef90_R6ETV2	Phage terminase small subunit P27 family	NA
UHGV-0057355_28	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0057355_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0057355_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0057355_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057355_30	UniRef90	UniRef90_R6ERW5	HNH endonuclease	NA
UHGV-0057355_30	eggNOG-mapper	999413.HMPREF1094_02014	HNH nucleases	NA
UHGV-0057355_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0057355_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057355_31	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0057355_31	eggNOG-mapper	936375.HMPREF1152_1066	NA	NA
UHGV-0057355_31	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0057355_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0057355_33	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0057355_38	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0057355_38	AcrCatalog	cluster_47493	NA	NA
UHGV-0057355_39	PHROG	phrog_24490	NA	unknown function
UHGV-0057355_39	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-0057355_42	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0057355_42	PHROG	phrog_923	NA	unknown function
UHGV-0057355_42	UniRef90	UniRef90_UPI001031ED10	pentapeptide repeat-containing protein	NA
UHGV-0057355_42	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0057355_42	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0057355_42	Pfam	PF13576	Pentapeptide repeats (9 copies)	Pentapeptide_3
UHGV-0057355_42	Pfam	PF19062	NA	DUF5758
UHGV-0057355_42	COG	COG1357	NA	NA
UHGV-0057355_42	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0057355_44	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0057355_44	PHROG	phrog_32437	NA	unknown function
UHGV-0057355_44	UniRef90	UniRef90_R6ETT3	Transglycosylase SLT domain protein	NA
UHGV-0057355_44	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-0057355_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0057355_44	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0057355_44	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0057355_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0057355_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057355_48	UniRef90	UniRef90_R5R752	HTH-type transcriptional regulator AnsR family protein	NA
UHGV-0057355_48	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057355_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057355_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0057355_48	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0057355_49	UniRef90	UniRef90_R5R073	HTH cro/C1-type domain-containing protein	NA
UHGV-0057355_49	eggNOG-mapper	565653.EGBG_01588	transcriptional	NA
UHGV-0057355_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057355_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057355_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0057355_52	PHROG	phrog_7566	NA	unknown function
UHGV-0057355_52	eggNOG-mapper	1410650.JHWL01000003_gene2846	NA	NA
UHGV-0057355_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057355_56	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-0057355_56	eggNOG-mapper	1497679.EP56_15175	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057355_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0057355_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057355_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0057355_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057355_59	UniRef90	UniRef90_UPI001D088238	helix-turn-helix transcriptional regulator	NA
UHGV-0057355_59	eggNOG-mapper	565664.EFXG_02685	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057355_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0057355_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057355_59	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0057355_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057355_61	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0057355_61	UniRef90	UniRef90_A0A6N9PZ34	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0057355_61	eggNOG-mapper	397287.C807_03672	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0057355_61	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0057355_61	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0057355_61	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0057355_62	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0057355_62	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0057355_62	UniRef90	UniRef90_A0A176U291	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0057355_62	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0057355_62	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0057355_62	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0057355_62	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0057355_63	KOfam	K14059	int; integrase	NA
UHGV-0057355_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0057355_63	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0057355_63	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0057355_63	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0057355_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057355_63	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0057355_63	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA