UHGV-0057390

Genome information

Genome length 29,939 bps

CDS count 43

Completeness 59.74% (medium-quality)

geNomad score 0.9340

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057390
vOTU ID	vOTU-026753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_34472
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9340
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.66
Jumbo phage	No

Genome content
Genome length	29,939 bps
GC content	42.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.31%
Average CDS length	640.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057390_1	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0057390_3	PHROG	phrog_10316	tail fiber protein	tail
UHGV-0057390_3	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0057390_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0057390_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0057390_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0057390_5	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0057390_5	eggNOG-mapper	1151292.QEW_4525	nuclear chromosome segregation	NA
UHGV-0057390_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0057390_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0057390_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0057390_6	PHROG	phrog_706	NA	unknown function
UHGV-0057390_6	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0057390_6	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-0057390_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0057390_6	Structural annotation	PF06854	NA	NA
UHGV-0057390_7	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0057390_7	Structural annotation	PF10666	NA	NA
UHGV-0057390_8	PHROG	phrog_820	major tail protein	tail
UHGV-0057390_8	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0057390_8	COG	COG5492	NA	NA
UHGV-0057390_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0057390_9	Structural annotation	PF12691	NA	NA
UHGV-0057390_10	UniRef90	UniRef90_A0A174ZTE4	Minor capsid protein	NA
UHGV-0057390_10	eggNOG-mapper	1231057.AMGD01000018_gene3615	Minor capsid protein	NA
UHGV-0057390_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0057390_11	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0057390_11	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0057390_11	eggNOG-mapper	1295642.H839_08324	Minor capsid protein	NA
UHGV-0057390_11	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0057390_11	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0057390_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0057390_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0057390_12	eggNOG-mapper	1449343.JQLQ01000002_gene1331	NA	NA
UHGV-0057390_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0057390_14	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0057390_14	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0057390_14	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0057390_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0057390_15	eggNOG-mapper	195103.CPF_0955	NA	NA
UHGV-0057390_16	Structural annotation	PF12305	NA	NA
UHGV-0057390_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0057390_17	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0057390_17	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0057390_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0057390_17	COG	COG2369	NA	NA
UHGV-0057390_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0057390_18	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0057390_18	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0057390_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0057390_18	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0057390_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0057390_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0057390_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0057390_19	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0057390_19	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0057390_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0057390_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0057390_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0057390_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0057390_20	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0057390_20	Structural annotation	PF07141	NA	NA
UHGV-0057390_22	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-0057390_22	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0057390_22	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0057390_22	eggNOG-mapper	1123075.AUDP01000039_gene182	Participates in transcription elongation, termination and antitermination	NA
UHGV-0057390_22	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0057390_22	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0057390_22	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0057390_23	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0057390_23	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0057390_23	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0057390_23	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0057390_23	Structural annotation	PF11985	NA	NA
UHGV-0057390_24	PHROG	phrog_25462	NA	unknown function
UHGV-0057390_24	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0057390_24	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0057390_24	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0057390_25	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0057390_26	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0057390_26	UniRef90	UniRef90_UPI0015C64303	helix-turn-helix domain-containing protein	NA
UHGV-0057390_26	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057390_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057390_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0057390_27	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0057390_27	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0057390_27	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0057390_28	PHROG	phrog_286	NA	unknown function
UHGV-0057390_28	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0057390_28	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0057390_28	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0057390_28	Structural annotation	PF06252	NA	NA
UHGV-0057390_29	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0057390_29	AcrCatalog	cluster_71843	NA	NA
UHGV-0057390_30	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0057390_30	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0057390_30	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0057390_30	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0057390_30	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0057390_33	PHROG	phrog_4292	NA	unknown function
UHGV-0057390_33	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0057390_34	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0057390_34	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0057390_34	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0057390_34	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0057390_34	Pfam	PF13401	AAA domain	AAA_22
UHGV-0057390_34	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0057390_34	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0057390_35	PHROG	phrog_310	transposase	integration and excision
UHGV-0057390_35	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0057390_35	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0057390_35	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0057390_35	Pfam	PF00665	Integrase core domain	rve
UHGV-0057390_35	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0057390_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0057390_35	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0057390_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0057390_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057390_39	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0057390_39	eggNOG-mapper	1235792.C808_01473	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057390_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057390_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0057390_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0057390_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0057390_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0057390_41	UniRef90	UniRef90_A0A6N4APD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0057390_41	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0057390_41	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0057390_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0057390_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0057390_41	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0057390_42	PHROG	phrog_17982	NA	unknown function
UHGV-0057390_42	UniRef90	UniRef90_A0A174ZZ57	NA	NA
UHGV-0057390_42	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0057390_42	Pfam	PF14020	NA	DUF4236
UHGV-0057390_43	KOfam	K07012	cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]	NA
UHGV-0057390_43	UniRef90	UniRef90_B0MPS6	CRISPR-associated endonuclease Cas3-HD	NA
UHGV-0057390_43	eggNOG-mapper	641112.ACOK01000086_gene3456	CRISPR-associated helicase, Cas3	NA
UHGV-0057390_43	PADLOC	Cas3c_WP_004513240.1	NA	CRISPR-CAS
UHGV-0057390_43	Pfam	PF18019	Cas3, HD domain	Cas3_HD
UHGV-0057390_43	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-0057390_43	NCBIFam	TIGR01596.1	CRISPR-associated endonuclease Cas3''	NA
UHGV-0057390_43	COG	COG1203	CRISPR-Cas type I system-associated endonuclease/helicase Cas3	NA