UHGV-0057470

Genome information

Genome length 31,899 bps

CDS count 47

Completeness 87.28% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057470
vOTU ID	vOTU-035962
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_44207
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.85
Jumbo phage	No

Genome content
Genome length	31,899 bps
GC content	58.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.76%
Average CDS length	620.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057470_1	PHROG	phrog_14030	NA	unknown function
UHGV-0057470_1	UniRef90	UniRef90_UPI001106D7C1	peptidoglycan-binding protein	NA
UHGV-0057470_1	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0057470_1	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0057470_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0057470_2	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0057470_2	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-0057470_3	PHROG	phrog_13589	NA	unknown function
UHGV-0057470_3	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0057470_4	PHROG	phrog_31538	NA	unknown function
UHGV-0057470_5	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0057470_6	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0057470_7	PHROG	phrog_26795	NA	unknown function
UHGV-0057470_7	eggNOG-mapper	796940.HMPREF9628_00133	NA	NA
UHGV-0057470_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0057470_8	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0057470_8	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0057470_8	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0057470_9	PHROG	phrog_33680	NA	unknown function
UHGV-0057470_9	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0057470_9	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-0057470_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0057470_9	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0057470_11	Structural annotation	PF11836	NA	NA
UHGV-0057470_12	PHROG	phrog_88	major tail protein	tail
UHGV-0057470_12	UniRef90	UniRef90_A0A174CNN5	Phage major tail protein, phi13 family	NA
UHGV-0057470_12	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0057470_12	COG	COG5492	NA	NA
UHGV-0057470_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0057470_13	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0057470_13	Structural annotation	TIGR01725	NA	NA
UHGV-0057470_14	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0057470_14	Structural annotation	PF05657	NA	NA
UHGV-0057470_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0057470_15	UniRef90	UniRef90_A0A890FC27	Phage head closure protein	NA
UHGV-0057470_15	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0057470_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0057470_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057470_16	PHROG	phrog_5223	neck protein	connector
UHGV-0057470_16	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-0057470_16	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-0057470_16	Structural annotation	TIGR01560	NA	NA
UHGV-0057470_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057470_17	UniRef90	UniRef90_A0A3D4JZM2	Phage major capsid protein	NA
UHGV-0057470_17	eggNOG-mapper	318464.IO99_13750	Phage major capsid protein, HK97 family	NA
UHGV-0057470_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057470_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057470_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057470_17	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057470_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0057470_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0057470_18	UniRef90	UniRef90_U4R420	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0057470_18	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0057470_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0057470_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0057470_18	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0057470_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057470_19	UniRef90	UniRef90_R8W4B0	HK97 family phage portal protein	NA
UHGV-0057470_19	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-0057470_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057470_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057470_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0057470_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057470_20	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0057470_20	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0057470_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057470_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057470_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057470_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0057470_21	PHROG	phrog_1066	NA	unknown function
UHGV-0057470_21	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0057470_21	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0057470_22	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-0057470_22	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0057470_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0057470_23	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0057470_23	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0057470_23	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0057470_23	Structural annotation	PF14205	NA	NA
UHGV-0057470_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057470_24	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0057470_24	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0057470_25	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0057470_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0057470_25	UniRef90	UniRef90_T0ZWM5	DNA methylase N-4/N-6 domain protein (Fragment)	NA
UHGV-0057470_25	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0057470_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0057470_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0057470_25	COG	COG0863	DNA modification methylase	NA
UHGV-0057470_27	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0057470_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0057470_27	UniRef90	UniRef90_A0A382NR23	N6_N4_Mtase domain-containing protein (Fragment)	NA
UHGV-0057470_27	eggNOG-mapper	331869.BAL199_10872	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0057470_27	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0057470_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0057470_27	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0057470_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0057470_31	PHROG	phrog_27290	NA	unknown function
UHGV-0057470_31	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0057470_31	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0057470_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0057470_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0057470_31	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0057470_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0057470_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0057470_32	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0057470_32	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0057470_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0057470_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0057470_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0057470_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0057470_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0057470_33	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0057470_33	eggNOG-mapper	663278.Ethha_2283	Participates in initiation and elongation during chromosome replication	NA
UHGV-0057470_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0057470_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0057470_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0057470_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0057470_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057470_34	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0057470_34	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0057470_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0057470_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0057470_34	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0057470_36	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0057470_37	UniRef90	UniRef90_A0A6C2UN65	HTH_17 domain-containing protein	NA
UHGV-0057470_37	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0057470_37	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0057470_37	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0057470_39	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0057470_39	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0057470_39	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057470_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057470_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0057470_39	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0057470_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0057470_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057470_40	UniRef90	UniRef90_UPI001BB47897	helix-turn-helix domain-containing protein	NA
UHGV-0057470_40	eggNOG-mapper	1226322.HMPREF1545_00090	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0057470_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057470_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057470_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0057470_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057470_43	UniRef90	UniRef90_A0A845MZE2	Helix-turn-helix domain-containing protein	NA
UHGV-0057470_43	eggNOG-mapper	1211817.CCAT010000003_gene273	transcriptional regulator	NA
UHGV-0057470_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0057470_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057470_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057470_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0057470_45	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0057470_46	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0057470_47	KOfam	K14059	int; integrase	NA
UHGV-0057470_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0057470_47	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0057470_47	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0057470_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0057470_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057470_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057470_47	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA