UHGV-0057472

Genome information

Genome length 36,488 bps

CDS count 55

Completeness 97.04% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057472
vOTU ID	vOTU-060064
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_44204
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.46
Jumbo phage	No

Genome content
Genome length	36,488 bps
GC content	57.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.67%
Average CDS length	611.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057472_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057472_1	UniRef90	UniRef90_A0A417F5W2	HNH endonuclease	NA
UHGV-0057472_1	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0057472_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0057472_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0057472_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0057472_2	Structural annotation	PF15188	NA	NA
UHGV-0057472_3	UniRef90	UniRef90_UPI001314958C	conjugal transfer protein	NA
UHGV-0057472_3	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0057472_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057472_4	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0057472_4	Structural annotation	PF01446	NA	NA
UHGV-0057472_5	PHROG	phrog_22543	NA	unknown function
UHGV-0057472_6	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0057472_6	PHROG	phrog_27290	NA	unknown function
UHGV-0057472_6	UniRef90	UniRef90_UPI001C01E910	ParB N-terminal domain-containing protein	NA
UHGV-0057472_6	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0057472_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0057472_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0057472_6	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0057472_7	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0057472_7	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0057472_7	UniRef90	UniRef90_A0A417F5K0	ParA family protein	NA
UHGV-0057472_7	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0057472_7	Pfam	PF13614	AAA domain	AAA_31
UHGV-0057472_7	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0057472_7	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0057472_8	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0057472_8	Structural annotation	PF02796	NA	NA
UHGV-0057472_10	Structural annotation	PF07870	NA	NA
UHGV-0057472_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0057472_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0057472_11	UniRef90	UniRef90_A0A3E2XWR1	DNA helicase	NA
UHGV-0057472_11	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0057472_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0057472_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0057472_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0057472_11	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0057472_12	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057472_12	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0057472_12	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0057472_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0057472_12	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0057472_15	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0057472_15	UniRef90	UniRef90_A0A417HFZ8	XRE family transcriptional regulator	NA
UHGV-0057472_15	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057472_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0057472_15	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0057472_15	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0057472_16	UniRef90	UniRef90_A0A417F5Y8	DNA-binding protein	NA
UHGV-0057472_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0057472_17	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0057472_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057472_17	UniRef90	UniRef90_A0A416DGY5	XRE family transcriptional regulator	NA
UHGV-0057472_17	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0057472_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057472_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057472_17	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0057472_18	PHROG	phrog_87	metallo-protease	other
UHGV-0057472_18	UniRef90	UniRef90_A0A3E2XRF6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0057472_18	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0057472_18	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0057472_19	PHROG	phrog_38135	NA	unknown function
UHGV-0057472_19	UniRef90	UniRef90_A0A416DH09	NA	NA
UHGV-0057472_19	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-0057472_19	Pfam	PF14020	NA	DUF4236
UHGV-0057472_19	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0057472_20	KOfam	K14059	int; integrase	NA
UHGV-0057472_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0057472_20	UniRef90	UniRef90_A0A417F5S2	Site-specific integrase	NA
UHGV-0057472_20	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0057472_20	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0057472_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057472_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057472_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0057472_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0057472_21	PHROG	phrog_670	endolysin	lysis
UHGV-0057472_21	UniRef90	UniRef90_A0A845N0R6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0057472_21	eggNOG-mapper	1120998.AUFC01000016_gene8	Ami_2	NA
UHGV-0057472_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0057472_21	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0057472_21	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0057472_22	UniRef90	UniRef90_A0A417VVG5	Phage holin	NA
UHGV-0057472_22	eggNOG-mapper	445972.ANACOL_01874	COG COG5546 Small integral membrane protein	NA
UHGV-0057472_22	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0057472_22	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0057472_22	COG	COG5546	NA	NA
UHGV-0057472_22	Structural annotation	COG5546	NA	NA
UHGV-0057472_23	PHROG	phrog_937	hemolysin	other
UHGV-0057472_23	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0057472_25	PHROG	phrog_134	NA	unknown function
UHGV-0057472_25	UniRef90	UniRef90_A0A845N2N7	XkdX family protein	NA
UHGV-0057472_25	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0057472_25	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0057472_25	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0057472_25	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0057472_27	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0057472_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0057472_27	UniRef90	UniRef90_A0A3E2XWT3	Integrase	NA
UHGV-0057472_27	eggNOG-mapper	1235835.C814_01938	Belongs to the 'phage' integrase family	NA
UHGV-0057472_27	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0057472_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057472_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0057472_27	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0057472_29	PHROG	phrog_18723	NA	unknown function
UHGV-0057472_30	Structural annotation	NF012201	NA	NA
UHGV-0057472_31	PHROG	phrog_521	tail protein	tail
UHGV-0057472_31	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0057472_31	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0057472_31	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0057472_31	COG	COG3778	NA	NA
UHGV-0057472_31	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0057472_32	PHROG	phrog_6	baseplate protein	tail
UHGV-0057472_32	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0057472_32	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0057472_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0057472_32	COG	COG3299	NA	NA
UHGV-0057472_32	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0057472_33	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0057472_33	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0057472_33	Pfam	PF10934	NA	DUF2634
UHGV-0057472_33	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0057472_33	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0057472_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057472_34	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0057472_34	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0057472_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057472_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057472_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057472_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0057472_35	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0057472_36	PHROG	phrog_400	tail protein	tail
UHGV-0057472_36	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0057472_36	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0057472_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-0057472_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0057472_36	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0057472_37	PHROG	phrog_23201	NA	unknown function
UHGV-0057472_37	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0057472_37	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0057472_37	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0057472_37	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0057472_38	PHROG	phrog_7972	NA	unknown function
UHGV-0057472_38	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0057472_38	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0057472_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0057472_38	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0057472_40	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0057472_40	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0057472_40	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0057472_41	eggNOG-mapper	1203606.HMPREF1526_01343	NA	NA
UHGV-0057472_41	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0057472_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0057472_42	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0057472_42	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0057472_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0057472_42	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0057472_43	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0057472_43	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0057472_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0057472_43	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0057472_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057472_44	UniRef90	UniRef90_UPI001C027BD5	head-tail connector protein	NA
UHGV-0057472_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0057472_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0057472_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0057472_45	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0057472_45	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0057472_45	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0057472_45	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0057472_45	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0057472_45	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0057472_45	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0057472_46	PHROG	phrog_365	tail protein	tail
UHGV-0057472_46	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0057472_46	eggNOG-mapper	1203606.HMPREF1526_01345	Phage tail tube protein	NA
UHGV-0057472_46	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0057472_46	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0057472_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057472_47	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0057472_47	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0057472_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057472_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057472_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057472_47	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057472_48	PHROG	phrog_1480	tail sheath	tail
UHGV-0057472_48	UniRef90	UniRef90_A0A845N0B3	Phage tail protein	NA
UHGV-0057472_48	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-0057472_48	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0057472_48	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0057472_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057472_49	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0057472_49	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0057472_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057472_49	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0057472_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057472_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0057472_54	PHROG	phrog_474	phosphofructokinase	other
UHGV-0057472_54	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0057472_54	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0057472_54	Pfam	PF19905	NA	DUF6378
UHGV-0057472_54	Structural annotation	PF19905	NA	NA
UHGV-0057472_55	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0057472_55	UniRef90	UniRef90_A0A417HFX2	Phage terminase small subunit P27 family	NA
UHGV-0057472_55	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0057472_55	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0057472_55	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0057472_55	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0057472_55	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA