UHGV-0057491

Genome information

Genome length 23,786 bps

CDS count 37

Completeness 69.16% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057491
vOTU ID	vOTU-031304
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_41681
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.98
Jumbo phage	No

Genome content
Genome length	23,786 bps
GC content	39.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.73%
Average CDS length	585.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057491_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0057491_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057491_4	UniRef90	UniRef90_R8I2Q5	HTH cro/C1-type domain-containing protein	NA
UHGV-0057491_4	eggNOG-mapper	1280689.AUJC01000022_gene1981	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0057491_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057491_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057491_4	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0057491_6	KOfam	K14059	int; integrase	NA
UHGV-0057491_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0057491_6	UniRef90	UniRef90_A0A3D1SDH9	Tyr recombinase domain-containing protein	NA
UHGV-0057491_6	eggNOG-mapper	1232449.BAHV02000008_gene609	Site-specific recombinase, phage integrase family	NA
UHGV-0057491_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057491_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057491_8	PHROG	phrog_1863	NA	unknown function
UHGV-0057491_8	eggNOG-mapper	66692.ABC2817	NA	NA
UHGV-0057491_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0057491_9	PHROG	phrog_291	endolysin	lysis
UHGV-0057491_9	eggNOG-mapper	999411.HMPREF1092_03301	family 25	NA
UHGV-0057491_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0057491_9	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0057491_10	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0057491_13	PHROG	phrog_5811	NA	unknown function
UHGV-0057491_13	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0057491_14	PHROG	phrog_7064	tail protein	tail
UHGV-0057491_14	eggNOG-mapper	1235800.C819_04023	NA	NA
UHGV-0057491_14	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0057491_15	PHROG	phrog_20385	minor tail protein	tail
UHGV-0057491_15	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0057491_15	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0057491_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0057491_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0057491_16	UniRef90	UniRef90_A0A6N8HZ99	Phage-related minor tail protein	NA
UHGV-0057491_16	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0057491_16	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0057491_16	Structural annotation	COG5280	NA	NA
UHGV-0057491_18	PHROG	phrog_88	major tail protein	tail
UHGV-0057491_18	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0057491_18	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0057491_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0057491_18	COG	COG5492	NA	NA
UHGV-0057491_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0057491_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0057491_19	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0057491_19	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0057491_19	Structural annotation	TIGR01725	NA	NA
UHGV-0057491_20	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0057491_20	Structural annotation	PF05657	NA	NA
UHGV-0057491_21	PHROG	phrog_19734	NA	unknown function
UHGV-0057491_21	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0057491_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057491_22	PHROG	phrog_2550	NA	unknown function
UHGV-0057491_22	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0057491_22	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0057491_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0057491_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057491_23	UniRef90	UniRef90_UPI001E346EE7	phage major capsid protein	NA
UHGV-0057491_23	eggNOG-mapper	1033744.CAEL01000029_gene1282	phage major capsid protein, HK97 family	NA
UHGV-0057491_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057491_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057491_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057491_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057491_24	KOfam	K06904	NA	NA
UHGV-0057491_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0057491_24	UniRef90	UniRef90_A0A358PQU8	HK97 family phage prohead protease	NA
UHGV-0057491_24	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0057491_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0057491_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0057491_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0057491_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0057491_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057491_25	UniRef90	UniRef90_UPI001896E01B	phage portal protein	NA
UHGV-0057491_25	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-0057491_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057491_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0057491_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057491_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0057491_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057491_26	UniRef90	UniRef90_R5VJG5	Phage terminase large subunit	NA
UHGV-0057491_26	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0057491_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057491_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057491_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057491_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0057491_27	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0057491_27	UniRef90	UniRef90_UPI000307376F	P27 family phage terminase small subunit	NA
UHGV-0057491_27	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0057491_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0057491_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0057491_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0057491_28	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0057491_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0057491_29	eggNOG-mapper	1688.BCUN_0619	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0057491_29	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0057491_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0057491_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0057491_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0057491_31	UniRef90	UniRef90_N9WF59	MazG domain-containing protein	NA
UHGV-0057491_31	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0057491_34	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0057491_34	UniRef90	UniRef90_A0A843QQL1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0057491_34	eggNOG-mapper	997350.HMPREF9129_1668	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0057491_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0057491_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0057491_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0057491_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0057491_35	UniRef90	UniRef90_UPI001F420DC7	single-stranded DNA-binding protein	NA
UHGV-0057491_35	eggNOG-mapper	1410638.JHXJ01000019_gene481	Single-stranded DNA-binding protein	NA
UHGV-0057491_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0057491_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0057491_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0057491_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0057491_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0057491_37	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057491_37	UniRef90	UniRef90_UPI001BA4B312	conserved phage C-terminal domain-containing protein	NA
UHGV-0057491_37	eggNOG-mapper	676032.FN3523_1026	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0057491_37	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0057491_37	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0057491_37	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0057491_37	Structural annotation	PF09524, PF01978, MF_01819, TIGR02220, TIGR01610, COG3355	NA	NA