UHGV-0057524

Genome information

Genome length 36,305 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057524
vOTU ID	vOTU-014025
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_53839
BioSample	SAMEA2151383
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.18
Jumbo phage	No

Genome content
Genome length	36,305 bps
GC content	48.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.85%
Average CDS length	598.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057524_4	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0057524_5	PHROG	phrog_5984	NA	unknown function
UHGV-0057524_5	eggNOG-mapper	1203606.HMPREF1526_01893	NA	NA
UHGV-0057524_6	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0057524_6	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0057524_6	UniRef90	UniRef90_A0A372DXI8	Methyltransferase	NA
UHGV-0057524_6	eggNOG-mapper	1434319.W5RV19_9CAUD	helicase activity	NA
UHGV-0057524_6	PADLOC	MTase_II_00014	Type II methyltransferase	RM
UHGV-0057524_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0057524_6	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0057524_7	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0057524_7	UniRef90	UniRef90_UPI00195ABE60	SAM-dependent methyltransferase	NA
UHGV-0057524_7	eggNOG-mapper	873513.HMPREF6485_1350	Methyltransferase domain	NA
UHGV-0057524_7	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0057524_7	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0057524_7	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0057524_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0057524_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0057524_8	UniRef90	UniRef90_A0A1Q6RLA2	Methyltransferase	NA
UHGV-0057524_8	eggNOG-mapper	1434319.W5RV19_9CAUD	helicase activity	NA
UHGV-0057524_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0057524_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0057524_8	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0057524_11	PHROG	phrog_24368	NA	unknown function
UHGV-0057524_12	PHROG	phrog_98	NA	unknown function
UHGV-0057524_12	UniRef90	UniRef90_A0A372UJN3	YopX domain-containing protein	NA
UHGV-0057524_12	eggNOG-mapper	1118063.I7ILU6_9CAUD	YopX protein	NA
UHGV-0057524_12	Pfam	PF09643	YopX protein	YopX
UHGV-0057524_12	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0057524_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0057524_14	PHROG	phrog_24386	NA	unknown function
UHGV-0057524_14	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0057524_14	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0057524_15	UniRef90	UniRef90_A0A3D2D6W4	HTH cro/C1-type domain-containing protein	NA
UHGV-0057524_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057524_16	eggNOG-mapper	1145276.T479_20115	NA	NA
UHGV-0057524_16	Structural annotation	PF21578	NA	NA
UHGV-0057524_17	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0057524_17	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0057524_17	UniRef90	UniRef90_A0A1Q6RL79	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0057524_17	eggNOG-mapper	641526.ADIWIN_2664	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0057524_17	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0057524_17	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0057524_17	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0057524_18	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0057524_18	UniRef90	UniRef90_A0A1Q6RL78	NA	NA
UHGV-0057524_18	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-0057524_18	Pfam	PF12961	NA	DUF3850
UHGV-0057524_18	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0057524_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0057524_20	UniRef90	UniRef90_A0A7X3A759	Transposase	NA
UHGV-0057524_20	eggNOG-mapper	1234679.BN424_2628	transposase activity	NA
UHGV-0057524_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0057524_21	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0057524_21	UniRef90	UniRef90_A0A1Q6RLA1	HNH domain-containing protein	NA
UHGV-0057524_21	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-0057524_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0057524_21	Pfam	PF13671	AAA domain	AAA_33
UHGV-0057524_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0057524_21	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0057524_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0057524_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057524_23	UniRef90	UniRef90_A0A3D2D5D4	Terminase	NA
UHGV-0057524_23	eggNOG-mapper	1123288.SOV_2c03650	Phage Terminase	NA
UHGV-0057524_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057524_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057524_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057524_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0057524_24	Structural annotation	PF18059, NF041911	NA	NA
UHGV-0057524_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057524_25	UniRef90	UniRef90_A0A316MSJ3	Portal protein	NA
UHGV-0057524_25	eggNOG-mapper	1536774.H70357_10620	Phage portal protein	NA
UHGV-0057524_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057524_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057524_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0057524_26	KOfam	K06904	NA	NA
UHGV-0057524_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0057524_26	UniRef90	UniRef90_A0A3D2D6S6	HK97 family phage prohead protease	NA
UHGV-0057524_26	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0057524_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0057524_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0057524_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0057524_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0057524_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057524_27	UniRef90	UniRef90_A0A3D2D5M2	Phage major capsid protein	NA
UHGV-0057524_27	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-0057524_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057524_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057524_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057524_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057524_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057524_30	Structural annotation	PF05657, NF040576, COG5003	NA	NA
UHGV-0057524_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0057524_31	Structural annotation	TIGR01725	NA	NA
UHGV-0057524_32	eggNOG-mapper	386043.lwe1231	phage tail protein	NA
UHGV-0057524_32	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0057524_35	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0057524_35	UniRef90	UniRef90_A0A449BF56	Phage-related minor tail protein	NA
UHGV-0057524_35	eggNOG-mapper	1278311.AUAL01000001_gene20	phage tail tape measure protein	NA
UHGV-0057524_35	COG	COG4372	NA	NA
UHGV-0057524_35	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0057524_36	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0057524_36	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-0057524_37	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0057524_40	PHROG	phrog_5207	NA	unknown function
UHGV-0057524_40	UniRef90	UniRef90_A0A1Q6RL97	Mtd_N domain-containing protein	NA
UHGV-0057524_40	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0057524_40	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0057524_40	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0057524_40	Structural annotation	PF18454	NA	NA
UHGV-0057524_41	PHROG	phrog_31660	tail fiber protein	tail
UHGV-0057524_41	UniRef90	UniRef90_A0A1Q6RLA5	Mtd_N domain-containing protein	NA
UHGV-0057524_41	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0057524_42	PHROG	phrog_5302	tail protein	tail
UHGV-0057524_42	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0057524_42	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-0057524_42	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0057524_42	Structural annotation	COG1262	NA	NA
UHGV-0057524_43	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0057524_43	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0057524_43	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-0057524_43	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0057524_43	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0057524_43	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0057524_43	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0057524_45	PHROG	phrog_4105	NA	unknown function
UHGV-0057524_45	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0057524_46	PHROG	phrog_13712	holin	lysis
UHGV-0057524_46	eggNOG-mapper	796940.HMPREF9628_01284	NA	NA
UHGV-0057524_46	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0057524_47	eggNOG-mapper	635013.TherJR_1205	TIGRFAM single-stranded-DNA-specific exonuclease RecJ	NA
UHGV-0057524_47	COG	COG0514	Superfamily II DNA helicase RecQ	NA
UHGV-0057524_47	Structural annotation	PF08797	NA	NA
UHGV-0057524_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0057524_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057524_48	UniRef90	UniRef90_A0A1Q6RLA9	HTH cro/C1-type domain-containing protein	NA
UHGV-0057524_48	eggNOG-mapper	742738.HMPREF9460_01714	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0057524_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057524_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0057524_48	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0057524_52	Structural annotation	PF10723, NF040976	NA	NA
UHGV-0057524_53	KOfam	K07497	K07497; putative transposase	NA
UHGV-0057524_53	PHROG	phrog_8463	transposase	integration and excision
UHGV-0057524_53	UniRef90	UniRef90_A0A1Q6RLB1	Integrase catalytic domain-containing protein	NA
UHGV-0057524_53	eggNOG-mapper	938289.CAJN020000007_gene170	Integrase core domain	NA
UHGV-0057524_53	Pfam	PF13565	Homeodomain-like domain	HTH_32
UHGV-0057524_53	Pfam	PF00665	Integrase core domain	rve
UHGV-0057524_53	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0057524_53	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0057524_53	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-0057524_54	UniRef90	UniRef90_UPI001D02ACD0	Maff2 family protein	NA
UHGV-0057524_54	eggNOG-mapper	411473.RUMCAL_01418	Maff2 family	NA
UHGV-0057524_54	Pfam	PF12750	Maff2 family	Maff2
UHGV-0057524_55	KOfam	K03205	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	NA
UHGV-0057524_55	UniRef90	UniRef90_U2M3F1	TraG-D_C domain-containing protein	NA
UHGV-0057524_55	eggNOG-mapper	411473.RUMCAL_01419	NA	NA
UHGV-0057524_55	Pfam	PF12696	TraM recognition site of TraD and TraG	TraG-D_C
UHGV-0057524_55	COG	COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	NA
UHGV-0057524_56	UniRef90	UniRef90_UPI00189C1F63	transposon-encoded TnpW family protein	NA
UHGV-0057524_56	eggNOG-mapper	411461.DORFOR_03237	Transposon-encoded protein TnpW	NA
UHGV-0057524_56	Pfam	PF14202	Transposon-encoded protein TnpW	TnpW