UHGV-0057539

Genome information

Genome length 27,874 bps

CDS count 44

Completeness 93.09% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057539
vOTU ID	vOTU-073073
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_38149
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.73
Jumbo phage	No

Genome content
Genome length	27,874 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.46%
Average CDS length	589.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057539_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0057539_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0057539_1	UniRef90	UniRef90_A0A2N0UK65	Sigma-24	NA
UHGV-0057539_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0057539_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0057539_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0057539_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0057539_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0057539_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-0057539_2	KOfam	K14059	int; integrase	NA
UHGV-0057539_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0057539_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0057539_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0057539_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057539_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0057539_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0057539_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0057539_4	PHROG	phrog_1914	NA	unknown function
UHGV-0057539_4	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0057539_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0057539_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0057539_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0057539_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0057539_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0057539_5	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0057539_5	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0057539_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057539_5	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0057539_6	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0057539_6	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0057539_6	Pfam	PF05339	NA	DUF739
UHGV-0057539_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0057539_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0057539_7	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0057539_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0057539_7	Structural annotation	NF007260	NA	NA
UHGV-0057539_8	PHROG	phrog_5765	NA	unknown function
UHGV-0057539_8	UniRef90	UniRef90_A0A374ND95	BC1881 family protein	NA
UHGV-0057539_8	eggNOG-mapper	926692.AZYG01000059_gene90	NA	NA
UHGV-0057539_8	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0057539_9	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0057539_9	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0057539_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0057539_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0057539_9	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0057539_9	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0057539_12	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0057539_13	PHROG	phrog_674	NA	unknown function
UHGV-0057539_13	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0057539_13	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0057539_13	Pfam	PF07083	NA	DUF1351
UHGV-0057539_13	Structural annotation	PF07083	NA	NA
UHGV-0057539_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0057539_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0057539_14	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0057539_14	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0057539_14	Pfam	PF03837	RecT family	RecT
UHGV-0057539_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0057539_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0057539_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0057539_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0057539_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0057539_15	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0057539_15	eggNOG-mapper	888059.HMPREF9071_2100	Beta-lactamase superfamily domain	NA
UHGV-0057539_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0057539_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0057539_15	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0057539_16	PHROG	phrog_398	NA	unknown function
UHGV-0057539_16	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0057539_16	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0057539_16	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0057539_16	Structural annotation	PF16784	NA	NA
UHGV-0057539_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057539_17	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0057539_17	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0057539_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0057539_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0057539_17	Structural annotation	PF14297	NA	NA
UHGV-0057539_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0057539_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0057539_18	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0057539_18	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0057539_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0057539_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0057539_18	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0057539_19	PHROG	phrog_824	NA	unknown function
UHGV-0057539_19	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0057539_19	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0057539_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0057539_19	Structural annotation	PF08774	NA	NA
UHGV-0057539_22	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0057539_23	PHROG	phrog_25754	NA	unknown function
UHGV-0057539_23	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0057539_23	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-0057539_26	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0057539_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057539_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057539_27	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0057539_27	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0057539_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0057539_28	PHROG	phrog_1066	NA	unknown function
UHGV-0057539_28	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0057539_28	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0057539_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057539_29	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0057539_29	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0057539_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057539_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057539_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057539_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0057539_30	UniRef90	UniRef90_A0A2A8H762	Phage portal protein (Fragment)	NA
UHGV-0057539_30	eggNOG-mapper	290402.Cbei_0907	Portal protein	NA
UHGV-0057539_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057539_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057539_31	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0057539_31	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0057539_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057539_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057539_31	Structural annotation	PF04860, COG4695	NA	NA
UHGV-0057539_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0057539_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0057539_32	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0057539_32	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0057539_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0057539_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0057539_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0057539_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057539_33	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0057539_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0057539_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057539_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057539_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057539_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057539_34	PHROG	phrog_5223	neck protein	connector
UHGV-0057539_34	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0057539_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0057539_34	Structural annotation	TIGR01560	NA	NA
UHGV-0057539_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0057539_35	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0057539_35	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0057539_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0057539_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057539_36	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0057539_36	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0057539_36	Structural annotation	TIGR01725	NA	NA
UHGV-0057539_37	Structural annotation	PF12691	NA	NA
UHGV-0057539_38	PHROG	phrog_885	major tail protein	tail
UHGV-0057539_38	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0057539_38	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0057539_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0057539_39	PHROG	phrog_1021	NA	unknown function
UHGV-0057539_41	PHROG	phrog_23464	NA	unknown function
UHGV-0057539_41	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0057539_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0057539_41	Structural annotation	COG3941	NA	NA
UHGV-0057539_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0057539_42	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0057539_42	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0057539_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0057539_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0057539_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0057539_43	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0057539_43	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0057539_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0057539_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0057539_43	COG	COG4926	Phage-related protein	NA
UHGV-0057539_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0057539_44	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0057539_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0057539_44	Structural annotation	PF10651, NF040788	NA	NA