UHGV-0057570

Genome information

Genome length 35,712 bps

CDS count 56

Completeness 81.70% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057570
vOTU ID	vOTU-017358
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_59679
BioSample	SAMEA2338758
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.85
Jumbo phage	No

Genome content
Genome length	35,712 bps
GC content	44.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.79%
Average CDS length	595.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057570_1	UniRef90	UniRef90_A0A1T5FTZ6	RelE-like toxin of type II toxin-antitoxin system HigB	NA
UHGV-0057570_1	eggNOG-mapper	877421.AUJT01000024_gene2231	NA	NA
UHGV-0057570_1	AcrCatalog	cluster_3470	NA	NA
UHGV-0057570_1	Structural annotation	PF05015, TIGR00053, COG4115	NA	NA
UHGV-0057570_2	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0057570_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0057570_2	UniRef90	UniRef90_D4RXQ2	Addiction module antidote protein HigA	NA
UHGV-0057570_2	eggNOG-mapper	511680.BUTYVIB_00603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057570_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057570_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0057570_2	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0057570_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0057570_2	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0057570_3	PHROG	phrog_87	metallo-protease	other
UHGV-0057570_3	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0057570_3	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0057570_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0057570_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0057570_3	Structural annotation	PF06114	NA	NA
UHGV-0057570_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0057570_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0057570_4	UniRef90	UniRef90_A0A416DTH1	HicB family protein	NA
UHGV-0057570_4	eggNOG-mapper	1235802.C823_03972	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0057570_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0057570_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0057570_4	Structural annotation	PF15919, TIGR04563, COG1598, COG4710	NA	NA
UHGV-0057570_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0057570_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0057570_5	UniRef90	UniRef90_A0A351THF1	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0057570_5	eggNOG-mapper	1123276.KB893268_gene4825	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0057570_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0057570_5	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0057570_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0057570_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0057570_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057570_6	UniRef90	UniRef90_A0A412EM95	XRE family transcriptional regulator	NA
UHGV-0057570_6	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0057570_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0057570_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057570_6	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0057570_13	Pfam	PF20323	NA	DUF6618
UHGV-0057570_13	Structural annotation	PF20323	NA	NA
UHGV-0057570_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057570_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0057570_14	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0057570_14	Structural annotation	PF21578	NA	NA
UHGV-0057570_15	PHROG	phrog_824	NA	unknown function
UHGV-0057570_15	UniRef90	UniRef90_UPI00164B300C	VRR-NUC domain-containing protein	NA
UHGV-0057570_15	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0057570_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0057570_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0057570_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0057570_17	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0057570_17	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0057570_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-0057570_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0057570_17	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0057570_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0057570_18	PHROG	phrog_15982	NA	unknown function
UHGV-0057570_18	UniRef90	UniRef90_A0A7X5CGW3	NA	NA
UHGV-0057570_18	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0057570_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0057570_18	Pfam	PF12961	NA	DUF3850
UHGV-0057570_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0057570_18	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0057570_19	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0057570_19	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0057570_19	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0057570_19	eggNOG-mapper	1232436.CAPF01000032_gene1341	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0057570_19	Pfam	PF00075	RNase H	RNase_H
UHGV-0057570_19	COG	COG0328	Ribonuclease HI	NA
UHGV-0057570_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0057570_20	PHROG	phrog_26861	NA	unknown function
UHGV-0057570_20	UniRef90	UniRef90_A0A396Q087	Single-stranded DNA-binding protein	NA
UHGV-0057570_20	eggNOG-mapper	1123075.AUDP01000013_gene3098	PFAM single-strand binding protein	NA
UHGV-0057570_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0057570_20	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0057570_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0057570_20	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0057570_22	Structural annotation	PF18024, TIGR04381	NA	NA
UHGV-0057570_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0057570_26	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0057570_26	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0057570_26	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0057570_29	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-0057570_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0057570_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0057570_30	UniRef90	UniRef90_A0A350VVC0	Single-stranded DNA-binding protein	NA
UHGV-0057570_30	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0057570_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0057570_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0057570_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0057570_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0057570_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0057570_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0057570_32	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0057570_32	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0057570_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0057570_32	Structural annotation	PF07141	NA	NA
UHGV-0057570_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0057570_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0057570_33	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0057570_33	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0057570_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0057570_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0057570_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0057570_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0057570_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0057570_34	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0057570_34	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0057570_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0057570_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0057570_35	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0057570_35	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0057570_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0057570_35	COG	COG2369	NA	NA
UHGV-0057570_35	Structural annotation	PF06152	NA	NA
UHGV-0057570_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0057570_37	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0057570_37	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0057570_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0057570_37	Structural annotation	PF06810	NA	NA
UHGV-0057570_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0057570_38	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0057570_38	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0057570_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0057570_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0057570_40	PHROG	phrog_3366	NA	unknown function
UHGV-0057570_40	Pfam	PF20536	NA	DUF6751
UHGV-0057570_40	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0057570_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0057570_41	UniRef90	UniRef90_F2JQ09	Minor capsid	NA
UHGV-0057570_41	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0057570_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0057570_41	Structural annotation	PF11114	NA	NA
UHGV-0057570_42	PHROG	phrog_3266	tail completion	connector
UHGV-0057570_42	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0057570_42	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0057570_42	Structural annotation	PF12691	NA	NA
UHGV-0057570_43	PHROG	phrog_3099	NA	unknown function
UHGV-0057570_43	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0057570_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0057570_44	PHROG	phrog_11299	NA	unknown function
UHGV-0057570_44	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0057570_44	Structural annotation	PF10666	NA	NA
UHGV-0057570_45	PHROG	phrog_706	NA	unknown function
UHGV-0057570_45	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0057570_45	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0057570_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0057570_45	Structural annotation	PF06854	NA	NA
UHGV-0057570_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0057570_46	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0057570_46	COG	COG1511	NA	NA
UHGV-0057570_47	PHROG	phrog_1194	NA	unknown function
UHGV-0057570_47	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0057570_47	Pfam	PF20458	NA	DUF6711
UHGV-0057570_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0057570_48	PHROG	phrog_18190	NA	unknown function
UHGV-0057570_48	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0057570_48	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0057570_52	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0057570_52	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0057570_52	UniRef90	UniRef90_A0A350RPP3	SPOR domain-containing protein	NA
UHGV-0057570_52	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0057570_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0057570_52	Pfam	PF05036	SPOR domain	SPOR
UHGV-0057570_52	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0057570_52	Structural annotation	PF01551, PF05036, MF_02022, NF040883, NF008641, COG0739	NA	NA
UHGV-0057570_53	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0057570_54	PHROG	phrog_9428	NA	unknown function
UHGV-0057570_54	UniRef90	UniRef90_A0A3A6GVM2	Serine/threonine protein kinase	NA
UHGV-0057570_54	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-0057570_56	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0057570_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0057570_56	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0057570_56	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-0057570_56	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0057570_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057570_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0057570_56	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA