UHGV-0057600

Genome information

Genome length 32,279 bps

CDS count 42

Completeness 84.68% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057600
vOTU ID	vOTU-036551
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_47748
BioSample	SAMEA2144396
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.02
Jumbo phage	No

Genome content
Genome length	32,279 bps
GC content	38.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.87%
Average CDS length	724.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057600_1	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0057600_1	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0057600_1	UniRef90	UniRef90_A0A413P9Z2	HicB family protein	NA
UHGV-0057600_1	eggNOG-mapper	1408311.JNJM01000002_gene1307	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0057600_1	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0057600_1	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0057600_1	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0057600_2	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0057600_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0057600_2	UniRef90	UniRef90_A0A1H3VXF8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0057600_2	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0057600_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0057600_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0057600_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0057600_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0057600_5	PHROG	phrog_291	endolysin	lysis
UHGV-0057600_5	UniRef90	UniRef90_A0A356C4L5	LysM domain-containing protein	NA
UHGV-0057600_5	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0057600_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0057600_5	Pfam	PF01476	LysM domain	LysM
UHGV-0057600_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0057600_5	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0057600_6	PHROG	phrog_199	holin	lysis
UHGV-0057600_6	UniRef90	UniRef90_A0A174PAV2	Phage-related holin (Lysis protein)	NA
UHGV-0057600_6	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0057600_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0057600_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0057600_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0057600_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0057600_8	PHROG	phrog_1330	tail protein	tail
UHGV-0057600_8	eggNOG-mapper	1437603.BMON_1128	NA	NA
UHGV-0057600_9	PHROG	phrog_38044	NA	unknown function
UHGV-0057600_9	UniRef90	UniRef90_A0A2V1JQ53	Ig-like domain-containing protein	NA
UHGV-0057600_9	eggNOG-mapper	1410624.JNKK01000045_gene547	NA	NA
UHGV-0057600_9	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0057600_10	PHROG	phrog_6616	tail protein	tail
UHGV-0057600_10	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0057600_10	eggNOG-mapper	1415775.U729_2618	Phage minor structural protein	NA
UHGV-0057600_10	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0057600_11	PHROG	phrog_1401	NA	unknown function
UHGV-0057600_11	UniRef90	UniRef90_UPI000A16CD19	NA	NA
UHGV-0057600_11	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0057600_11	Structural annotation	PF07761	NA	NA
UHGV-0057600_12	PHROG	phrog_1194	NA	unknown function
UHGV-0057600_12	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0057600_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0057600_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0057600_13	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0057600_13	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-0057600_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0057600_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0057600_14	PHROG	phrog_8355	NA	unknown function
UHGV-0057600_14	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0057600_14	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0057600_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0057600_14	Structural annotation	PF06854	NA	NA
UHGV-0057600_15	PHROG	phrog_8300	NA	unknown function
UHGV-0057600_15	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0057600_15	Structural annotation	PF06896	NA	NA
UHGV-0057600_16	PHROG	phrog_820	major tail protein	tail
UHGV-0057600_16	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0057600_16	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0057600_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0057600_17	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0057600_17	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0057600_17	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0057600_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0057600_17	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0057600_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0057600_18	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0057600_19	PHROG	phrog_8710	NA	unknown function
UHGV-0057600_19	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0057600_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0057600_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0057600_20	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0057600_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0057600_21	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0057600_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0057600_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0057600_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0057600_22	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0057600_23	PHROG	phrog_872	NA	unknown function
UHGV-0057600_23	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0057600_23	eggNOG-mapper	1123034.JMKP01000004_gene1746	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0057600_23	Pfam	PF11195	NA	DUF2829
UHGV-0057600_23	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0057600_23	Structural annotation	PF11195	NA	NA
UHGV-0057600_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0057600_25	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-0057600_25	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0057600_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0057600_25	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0057600_25	Structural annotation	PF06152	NA	NA
UHGV-0057600_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0057600_26	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-0057600_26	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0057600_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0057600_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0057600_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0057600_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0057600_27	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0057600_27	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0057600_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0057600_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0057600_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0057600_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0057600_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0057600_28	UniRef90	UniRef90_A0A413YU49	Terminase small subunit	NA
UHGV-0057600_28	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0057600_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0057600_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0057600_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0057600_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0057600_29	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0057600_29	Structural annotation	PF02996	NA	NA
UHGV-0057600_30	PHROG	phrog_20593	NA	unknown function
UHGV-0057600_33	PHROG	phrog_15077	NA	unknown function
UHGV-0057600_33	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0057600_33	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0057600_33	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0057600_34	PHROG	phrog_8470	NA	unknown function
UHGV-0057600_34	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0057600_34	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0057600_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0057600_34	Structural annotation	PF14284	NA	NA
UHGV-0057600_35	PHROG	phrog_4433	NA	unknown function
UHGV-0057600_35	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0057600_35	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0057600_35	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0057600_36	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0057600_37	Structural annotation	PF19962, NF011863	NA	NA
UHGV-0057600_38	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0057600_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0057600_38	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0057600_38	eggNOG-mapper	941824.TCEL_01720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0057600_38	Pfam	PF00075	RNase H	RNase_H
UHGV-0057600_38	COG	COG0328	Ribonuclease HI	NA
UHGV-0057600_38	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0057600_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057600_39	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0057600_39	Structural annotation	PF21578	NA	NA