UHGV-0057739

Genome information

vOTU vOTU-019927

Genome length 27,821 bps

CDS count 55

Completeness 71.35% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057739
vOTU ID	vOTU-019927
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_36570
BioSample	SAMEA2155134
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.67
Jumbo phage	No

Genome content
Genome length	27,821 bps
GC content	40.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.65%
Average CDS length	453.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057739_1	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0057739_1	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-0057739_1	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0057739_1	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0057739_1	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0057739_2	UniRef90	UniRef90_A0A412Q2M1	Phage head-tail joining protein	NA
UHGV-0057739_2	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-0057739_2	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0057739_2	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0057739_2	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0057739_3	UniRef90	UniRef90_A0A5S4VQ23	Phage gp6-like head-tail connector protein	NA
UHGV-0057739_3	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-0057739_3	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0057739_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0057739_4	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057739_4	eggNOG-mapper	742741.HMPREF9475_00425	Phage capsid family	NA
UHGV-0057739_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0057739_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0057739_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0057739_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0057739_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0057739_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0057739_5	UniRef90	UniRef90_A0A1C5T576	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0057739_5	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0057739_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0057739_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0057739_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0057739_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0057739_6	UniRef90	UniRef90_A0A412Q229	Phage portal protein	NA
UHGV-0057739_6	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-0057739_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0057739_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0057739_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0057739_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0057739_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0057739_7	UniRef90	UniRef90_A0A174ZPG1	Phage terminase-like protein, large subunit	NA
UHGV-0057739_7	eggNOG-mapper	742741.HMPREF9475_00422	Phage Terminase	NA
UHGV-0057739_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0057739_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0057739_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0057739_7	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0057739_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0057739_8	UniRef90	UniRef90_A0A414EC99	Phage terminase small subunit P27 family	NA
UHGV-0057739_8	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0057739_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0057739_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0057739_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0057739_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0057739_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057739_9	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-0057739_9	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-0057739_10	PHROG	phrog_1558	NA	unknown function
UHGV-0057739_10	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-0057739_10	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0057739_11	PHROG	phrog_4292	NA	unknown function
UHGV-0057739_15	PHROG	phrog_20593	NA	unknown function
UHGV-0057739_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0057739_16	Structural annotation	NF007260	NA	NA
UHGV-0057739_20	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0057739_20	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0057739_20	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-0057739_20	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-0057739_20	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0057739_20	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0057739_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0057739_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0057739_21	UniRef90	UniRef90_A0A1H3WZU0	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0057739_21	eggNOG-mapper	1042156.CXIVA_01880	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0057739_21	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0057739_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0057739_21	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0057739_22	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0057739_22	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0057739_25	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0057739_25	UniRef90	UniRef90_C4ZC58	HNHc domain-containing protein	NA
UHGV-0057739_25	eggNOG-mapper	1321372.AQQB01000060_gene44	HNH endonuclease	NA
UHGV-0057739_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0057739_25	Structural annotation	PF13392	NA	NA
UHGV-0057739_26	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0057739_26	UniRef90	UniRef90_A0A2X0YZP6	NA	NA
UHGV-0057739_26	eggNOG-mapper	1449126.JQKL01000051_gene3179	NA	NA
UHGV-0057739_26	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0057739_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0057739_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0057739_27	UniRef90	UniRef90_A0A3R5XI83	Single-stranded DNA-binding protein	NA
UHGV-0057739_27	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-0057739_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0057739_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0057739_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0057739_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0057739_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0057739_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0057739_28	PHROG	phrog_15982	NA	unknown function
UHGV-0057739_28	UniRef90	UniRef90_A0A414EC83	NA	NA
UHGV-0057739_28	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0057739_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0057739_28	Pfam	PF12961	NA	DUF3850
UHGV-0057739_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0057739_28	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0057739_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0057739_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0057739_30	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-0057739_30	eggNOG-mapper	1235792.C808_00063	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0057739_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-0057739_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0057739_30	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0057739_31	PHROG	phrog_20014	NA	unknown function
UHGV-0057739_31	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0057739_32	PHROG	phrog_824	NA	unknown function
UHGV-0057739_32	UniRef90	UniRef90_UPI001D062227	VRR-NUC domain-containing protein	NA
UHGV-0057739_32	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0057739_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0057739_33	Structural annotation	PF04612	NA	NA
UHGV-0057739_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0057739_34	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0057739_34	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-0057739_34	Structural annotation	PF21578	NA	NA
UHGV-0057739_36	PHROG	phrog_6058	NA	unknown function
UHGV-0057739_36	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0057739_36	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0057739_37	KOfam	K07486	K07486; transposase	NA
UHGV-0057739_37	PHROG	phrog_2199	transposase	integration and excision
UHGV-0057739_37	UniRef90	UniRef90_W3YPC8	Transposase	NA
UHGV-0057739_37	eggNOG-mapper	411468.CLOSCI_02088	COG COG3547 Transposase and inactivated derivatives	NA
UHGV-0057739_37	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0057739_37	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0057739_37	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0057739_37	COG	COG3547	Transposase	NA
UHGV-0057739_37	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0057739_38	PHROG	phrog_36092	NA	unknown function
UHGV-0057739_38	eggNOG-mapper	411468.CLOSCI_01466	NA	NA
UHGV-0057739_39	PHROG	phrog_750	NA	unknown function
UHGV-0057739_39	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0057739_39	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0057739_40	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0057739_44	PHROG	phrog_750	NA	unknown function
UHGV-0057739_44	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0057739_44	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0057739_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0057739_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057739_50	UniRef90	UniRef90_A0A1C6JSC5	Antitoxin PezA	NA
UHGV-0057739_50	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057739_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0057739_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0057739_50	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0057739_52	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0057739_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0057739_52	UniRef90	UniRef90_A0A1Q6KGJ8	Transcriptional regulator	NA
UHGV-0057739_52	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0057739_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0057739_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0057739_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0057739_54	PHROG	phrog_5783	NA	unknown function
UHGV-0057739_54	UniRef90	UniRef90_A0A0M6WJD5	NYN domain-containing protein	NA
UHGV-0057739_54	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-0057739_54	Pfam	PF01936	NYN domain	NYN
UHGV-0057739_54	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0057739_54	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0057739_55	KOfam	K14059	int; integrase	NA
UHGV-0057739_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0057739_55	UniRef90	UniRef90_UPI0019246A2B	tyrosine-type recombinase/integrase	NA
UHGV-0057739_55	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0057739_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0057739_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0057739_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA