UHGV-0057959

Genome information

Genome length 39,826 bps

CDS count 70

Completeness 53.31% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0057959
vOTU ID	vOTU-032511
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55392
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.3
Jumbo phage	No

Genome content
Genome length	39,826 bps
GC content	59.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.41%
Average CDS length	522.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0057959_1	KOfam	K18908	mepA; multidrug efflux pump	NA
UHGV-0057959_1	PHROG	phrog_6241	NA	unknown function
UHGV-0057959_1	UniRef90	UniRef90_UPI0004AEFA42	MATE family efflux transporter	NA
UHGV-0057959_1	eggNOG-mapper	476272.RUMHYD_02217	Mate efflux family protein	NA
UHGV-0057959_1	Pfam	PF01554	MatE	MatE
UHGV-0057959_1	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0057959_5	PHROG	phrog_10678	NA	unknown function
UHGV-0057959_8	PHROG	phrog_33611	NA	unknown function
UHGV-0057959_8	eggNOG-mapper	1226322.HMPREF1545_03511	NA	NA
UHGV-0057959_8	Structural annotation	PF07215	NA	NA
UHGV-0057959_9	UniRef90	UniRef90_W1I488	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-0057959_9	eggNOG-mapper	1232443.BAIA02000042_gene2393	NA	NA
UHGV-0057959_15	PHROG	phrog_38278	NA	unknown function
UHGV-0057959_15	UniRef90	UniRef90_A0A6I2R5T8	Helix-turn-helix domain-containing protein	NA
UHGV-0057959_15	Structural annotation	PF20075, TIGR03070, COG1476	NA	NA
UHGV-0057959_17	PHROG	phrog_9958	NA	unknown function
UHGV-0057959_17	UniRef90	UniRef90_A0A7X5DXB4	NA	NA
UHGV-0057959_17	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0057959_17	Pfam	PF19789	NA	DUF6273
UHGV-0057959_17	Structural annotation	PF19789	NA	NA
UHGV-0057959_19	PHROG	phrog_874	NA	unknown function
UHGV-0057959_19	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0057959_19	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0057959_19	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0057959_22	PHROG	phrog_4173	NA	unknown function
UHGV-0057959_22	eggNOG-mapper	537007.BLAHAN_05426	NA	NA
UHGV-0057959_23	PHROG	phrog_2355	NA	unknown function
UHGV-0057959_23	UniRef90	UniRef90_UPI0014124EFA	aminopeptidase N	NA
UHGV-0057959_23	eggNOG-mapper	1203606.HMPREF1526_00223	NA	NA
UHGV-0057959_25	PHROG	phrog_37721	NA	unknown function
UHGV-0057959_26	eggNOG-mapper	742735.HMPREF9467_03958	NA	NA
UHGV-0057959_27	PHROG	phrog_8760	NA	unknown function
UHGV-0057959_29	Structural annotation	PF17064	NA	NA
UHGV-0057959_31	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0057959_31	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0057959_31	UniRef90	UniRef90_UPI001EE1231A	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0057959_31	eggNOG-mapper	573061.Clocel_3800	stage V sporulation protein T	NA
UHGV-0057959_31	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0057959_31	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0057959_31	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0057959_31	Structural annotation	PF02381, TIGR01439, COG2002	NA	NA
UHGV-0057959_36	PHROG	phrog_5182	endolysin	lysis
UHGV-0057959_36	UniRef90	UniRef90_UPI00189CAD54	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0057959_36	eggNOG-mapper	411467.BACCAP_00698	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0057959_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0057959_36	Structural annotation	PF06940, TIGR02219	NA	NA
UHGV-0057959_38	Structural annotation	PF09682	NA	NA
UHGV-0057959_39	PHROG	phrog_37604	NA	unknown function
UHGV-0057959_39	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0057959_40	PHROG	phrog_27545	NA	unknown function
UHGV-0057959_40	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0057959_41	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0057959_41	UniRef90	UniRef90_UPI001AB04755	fibronectin type III domain-containing protein	NA
UHGV-0057959_41	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-0057959_41	Pfam	PF19789	NA	DUF6273
UHGV-0057959_41	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0057959_41	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0057959_41	Structural annotation	PF19789, PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0057959_42	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0057959_42	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0057959_42	UniRef90	UniRef90_A0A6I2R275	Reverse transcriptase	NA
UHGV-0057959_42	eggNOG-mapper	748224.HMPREF9436_01180	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0057959_42	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0057959_42	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0057959_42	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0057959_42	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0057959_43	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0057959_43	UniRef90	UniRef90_UPI001AB02C10	four helix bundle protein	NA
UHGV-0057959_43	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0057959_43	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0057959_43	Structural annotation	PF05635, NF033474	NA	NA
UHGV-0057959_44	PHROG	phrog_21058	NA	unknown function
UHGV-0057959_44	Structural annotation	PF15935	NA	NA
UHGV-0057959_45	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0057959_45	eggNOG-mapper	1203606.HMPREF1526_01355	NA	NA
UHGV-0057959_45	Structural annotation	PF12571	NA	NA
UHGV-0057959_46	PHROG	phrog_587	structural protein	head and packaging
UHGV-0057959_46	UniRef90	UniRef90_A0A6I2R1I6	NA	NA
UHGV-0057959_46	eggNOG-mapper	742740.HMPREF9474_03163	NA	NA
UHGV-0057959_46	Pfam	PF11041	NA	DUF2612
UHGV-0057959_46	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0057959_47	PHROG	phrog_6	baseplate protein	tail
UHGV-0057959_47	UniRef90	UniRef90_UPI0004048798	baseplate J/gp47 family protein	NA
UHGV-0057959_47	eggNOG-mapper	1235802.C823_01093	Baseplate J-like protein	NA
UHGV-0057959_47	COG	COG3299	NA	NA
UHGV-0057959_48	PHROG	phrog_120	baseplate protein	tail
UHGV-0057959_48	UniRef90	UniRef90_W0I0B3	NA	NA
UHGV-0057959_48	eggNOG-mapper	742740.HMPREF9474_03161	NA	NA
UHGV-0057959_48	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-0057959_49	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0057959_49	UniRef90	UniRef90_UPI001AB035F2	PAAR domain-containing protein	NA
UHGV-0057959_49	eggNOG-mapper	1226322.HMPREF1545_03564	PAAR motif	NA
UHGV-0057959_49	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0057959_49	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0057959_49	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0057959_50	UniRef90	UniRef90_A0A6I2R710	Gp138_N domain-containing protein	NA
UHGV-0057959_50	eggNOG-mapper	1120985.AUMI01000001_gene2160	Baseplate assembly protein	NA
UHGV-0057959_50	Pfam	PF18352	NA	Gp138_N
UHGV-0057959_50	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0057959_50	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0057959_51	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0057959_51	eggNOG-mapper	742740.HMPREF9474_03159	NA	NA
UHGV-0057959_51	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0057959_52	PHROG	phrog_34000	NA	unknown function
UHGV-0057959_52	UniRef90	UniRef90_A0A6I2R265	Bro-N domain-containing protein	NA
UHGV-0057959_52	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0057959_54	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0057959_54	eggNOG-mapper	1028806.GGE_1969	NA	NA
UHGV-0057959_54	Structural annotation	PF06531	NA	NA
UHGV-0057959_55	PHROG	phrog_817	tail fiber protein	tail
UHGV-0057959_55	eggNOG-mapper	1235802.C823_01088	NA	NA
UHGV-0057959_55	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0057959_55	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0057959_56	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0057959_56	UniRef90	UniRef90_A0A6I2R1H7	Tape measure protein	NA
UHGV-0057959_56	eggNOG-mapper	742740.HMPREF9474_03157	Phage tail tape measure protein, TP901 family	NA
UHGV-0057959_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0057959_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0057959_56	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0057959_57	PHROG	phrog_31474	NA	unknown function
UHGV-0057959_58	PHROG	phrog_1613	tail assembly chaperone	tail
UHGV-0057959_58	eggNOG-mapper	742740.HMPREF9474_03155	NA	NA
UHGV-0057959_58	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0057959_58	Structural annotation	PF21822	NA	NA
UHGV-0057959_59	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0057959_59	UniRef90	UniRef90_A0A6I2R0U6	NA	NA
UHGV-0057959_59	eggNOG-mapper	742740.HMPREF9474_03154	NA	NA
UHGV-0057959_59	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0057959_59	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-0057959_60	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0057959_60	UniRef90	UniRef90_A0A6I2R703	NA	NA
UHGV-0057959_60	eggNOG-mapper	742740.HMPREF9474_03153	NA	NA
UHGV-0057959_60	Pfam	PF11863	NA	DUF3383
UHGV-0057959_60	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0057959_61	PHROG	phrog_7975	tail terminator	connector
UHGV-0057959_61	eggNOG-mapper	1235802.C823_01083	NA	NA
UHGV-0057959_61	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0057959_62	PHROG	phrog_939	head protein	head and packaging
UHGV-0057959_62	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0057959_63	PHROG	phrog_222	tail protein	tail
UHGV-0057959_63	UniRef90	UniRef90_A0A1V4B235	Mu-like prophage protein gpG	NA
UHGV-0057959_63	eggNOG-mapper	1235802.C823_01081	NA	NA
UHGV-0057959_64	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0057959_64	UniRef90	UniRef90_A0A6I2QXG2	NA	NA
UHGV-0057959_64	eggNOG-mapper	742740.HMPREF9474_03150	NA	NA
UHGV-0057959_64	Pfam	PF13262	NA	DUF4054
UHGV-0057959_64	Structural annotation	PF13262	NA	NA
UHGV-0057959_66	PHROG	phrog_264	major head protein	head and packaging
UHGV-0057959_66	UniRef90	UniRef90_A0A6I2R1G2	NA	NA
UHGV-0057959_66	eggNOG-mapper	1235802.C823_01078	NA	NA
UHGV-0057959_66	Pfam	PF09950	NA	DUF2184
UHGV-0057959_66	COG	COG4834	NA	NA
UHGV-0057959_66	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0057959_67	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0057959_67	eggNOG-mapper	742740.HMPREF9474_03147	NA	NA
UHGV-0057959_67	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0057959_68	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-0057959_68	eggNOG-mapper	1235802.C823_01076	NA	NA
UHGV-0057959_68	COG	COG3566	NA	NA
UHGV-0057959_69	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0057959_69	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0057959_69	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-0057959_69	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0057959_69	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0057959_69	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0057959_69	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0057959_69	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0057959_69	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0057959_70	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0057959_70	UniRef90	UniRef90_A0A6B1UEC7	NA	NA
UHGV-0057959_70	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0057959_70	Pfam	PF06048	NA	DUF927
UHGV-0057959_70	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0057959_70	COG	COG5519	NA	NA
UHGV-0057959_70	Structural annotation	PF18662, PF06048, MF_01625, NF011296, COG5519	NA	NA