UHGV-0058013

Genome information

Genome length 23,513 bps

CDS count 39

Completeness 65.45% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058013
vOTU ID	vOTU-036074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_36828
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.52
Jumbo phage	No

Genome content
Genome length	23,513 bps
GC content	54.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	85.12%
Average CDS length	518.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058013_1	KOfam	K03309	TC.DAACS; dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family	NA
UHGV-0058013_1	PHROG	phrog_16930	NA	unknown function
UHGV-0058013_1	UniRef90	UniRef90_A0A1Q6E4R6	Dicarboxylate/amino acid:cation symporter	NA
UHGV-0058013_1	eggNOG-mapper	1034345.CAEM01000034_gene623	Sodium:dicarboxylate symporter family	NA
UHGV-0058013_1	Pfam	PF00375	Sodium:dicarboxylate symporter family	SDF
UHGV-0058013_1	COG	COG1301	Na+/H+-dicarboxylate symporter	NA
UHGV-0058013_1	Structural annotation	PF00375, MF_02063, NF008440, COG1301	NA	NA
UHGV-0058013_2	UniRef90	UniRef90_R6H7N2	UPF0473 protein MUS_2995	NA
UHGV-0058013_2	COG	COG3906	NA	NA
UHGV-0058013_4	KOfam	K14059	int; integrase	NA
UHGV-0058013_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0058013_4	UniRef90	UniRef90_A0A425VU74	Site-specific integrase	NA
UHGV-0058013_4	eggNOG-mapper	1235794.C811_01693	Belongs to the 'phage' integrase family	NA
UHGV-0058013_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058013_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058013_4	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0058013_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0058013_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0058013_6	UniRef90	UniRef90_A0A1Q6E4H7	HTH cro/C1-type domain-containing protein	NA
UHGV-0058013_6	eggNOG-mapper	268407.PWYN_03190	Peptidase S24-like	NA
UHGV-0058013_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0058013_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0058013_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0058013_6	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0058013_9	PHROG	phrog_36956	NA	unknown function
UHGV-0058013_11	UniRef90	UniRef90_R6HI93	HTH_17 domain-containing protein	NA
UHGV-0058013_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0058013_13	UniRef90	UniRef90_A0A8B0GPV3	NA	NA
UHGV-0058013_13	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-0058013_13	Pfam	PF07083	NA	DUF1351
UHGV-0058013_13	Structural annotation	PF07083	NA	NA
UHGV-0058013_14	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058013_14	UniRef90	UniRef90_R6HK90	Phage recombination protein Bet	NA
UHGV-0058013_14	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0058013_14	Pfam	PF03837	RecT family	RecT
UHGV-0058013_14	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0058013_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0058013_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058013_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058013_15	UniRef90	UniRef90_A0A1Q6E4G3	Single-stranded DNA-binding protein	NA
UHGV-0058013_15	eggNOG-mapper	742722.HMPREF9463_00204	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0058013_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058013_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058013_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058013_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058013_15	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0058013_17	UniRef90	UniRef90_R6HI89	Phg_2220_C domain-containing protein	NA
UHGV-0058013_17	eggNOG-mapper	526218.Sterm_0830	Transcriptional regulator	NA
UHGV-0058013_17	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0058013_17	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0058013_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0058013_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0058013_18	UniRef90	UniRef90_A0A1Q6E4K8	IstB_IS21 domain-containing protein	NA
UHGV-0058013_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0058013_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0058013_18	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0058013_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0058013_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058013_19	UniRef90	UniRef90_C8WLT7	Endodeoxyribonuclease RusA	NA
UHGV-0058013_19	eggNOG-mapper	479437.Elen_2598	Endodeoxyribonuclease RusA	NA
UHGV-0058013_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0058013_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0058013_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0058013_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0058013_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0058013_21	UniRef90	UniRef90_A0A7L5Z028	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0058013_21	eggNOG-mapper	1007096.BAGW01000014_gene1238	dUTPase	NA
UHGV-0058013_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-0058013_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0058013_23	PHROG	phrog_21525	NA	unknown function
UHGV-0058013_26	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0058013_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0058013_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0058013_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0058013_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0058013_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0058013_27	UniRef90	UniRef90_UPI001A9A5284	radical SAM protein	NA
UHGV-0058013_27	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0058013_27	COG	COG1533	DNA repair photolyase	NA
UHGV-0058013_28	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0058013_30	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0058013_30	UniRef90	UniRef90_UPI0013662E3C	helix-turn-helix domain-containing protein	NA
UHGV-0058013_30	eggNOG-mapper	661087.HMPREF1008_00898	NA	NA
UHGV-0058013_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058013_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0058013_31	UniRef90	UniRef90_A0A1Q6E4H5	Terminase	NA
UHGV-0058013_31	eggNOG-mapper	1232436.CAPF01000009_gene1764	Phage terminase, large subunit, PBSX family	NA
UHGV-0058013_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0058013_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058013_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058013_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0058013_32	eggNOG-mapper	469378.Ccur_02800	phage minor capsid protein	NA
UHGV-0058013_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0058013_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0058013_33	UniRef90	UniRef90_A0A172RXF3	Phage portal protein, putative, A118 family	NA
UHGV-0058013_33	eggNOG-mapper	661087.HMPREF1008_00894	phage minor capsid protein	NA
UHGV-0058013_33	Structural annotation	PF05133, TIGR01542, COG5511	NA	NA
UHGV-0058013_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0058013_34	UniRef90	UniRef90_A0A1H8UFB1	Toxin 50 (Fragment)	NA
UHGV-0058013_34	eggNOG-mapper	469378.Ccur_02790	Phage minor capsid protein 2	NA
UHGV-0058013_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0058013_34	COG	COG2369	NA	NA
UHGV-0058013_34	Structural annotation	PF06152	NA	NA
UHGV-0058013_36	PHROG	phrog_31118	NA	unknown function
UHGV-0058013_36	eggNOG-mapper	445975.COLSTE_01111	NA	NA
UHGV-0058013_36	Structural annotation	PF06810	NA	NA
UHGV-0058013_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0058013_37	UniRef90	UniRef90_A0A644YHM7	S-l_SbsC_C domain-containing protein	NA
UHGV-0058013_37	eggNOG-mapper	479437.Elen_2627	NA	NA
UHGV-0058013_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0058013_39	UniRef90	UniRef90_A0A3N0AN41	Minor capsid protein	NA
UHGV-0058013_39	eggNOG-mapper	479437.Elen_2630	Minor capsid protein	NA