UHGV-0058082

Genome information

vOTU vOTU-020934

Genome length 27,371 bps

CDS count 35

Completeness 72.31% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058082
vOTU ID	vOTU-020934
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_49195
BioSample	SAMEA2156675
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.26
Jumbo phage	No

Genome content
Genome length	27,371 bps
GC content	36.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	86.51%
Average CDS length	677.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058082_1	KOfam	K18197	yesW; rhamnogalacturonan endolyase [EC:4.2.2.23]	NA
UHGV-0058082_1	UniRef90	UniRef90_A0A412I2Y2	AraC family transcriptional regulator	NA
UHGV-0058082_1	eggNOG-mapper	515620.EUBELI_00335	NA	NA
UHGV-0058082_1	Pfam	PF01011	PQQ enzyme repeat	PQQ
UHGV-0058082_1	Pfam	PF21348	Rhamnogalacturonan lyase family 11, C-terminal domain	RGL11_C
UHGV-0058082_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0058082_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0058082_2	UniRef90	UniRef90_A0A413P9Z2	HicB family protein	NA
UHGV-0058082_2	eggNOG-mapper	1408311.JNJM01000002_gene1307	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0058082_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0058082_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0058082_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0058082_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0058082_3	UniRef90	UniRef90_A0A1H3VXF8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0058082_3	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0058082_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0058082_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0058082_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0058082_4	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0058082_4	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-0058082_4	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0058082_6	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0058082_6	UniRef90	UniRef90_A0A174P5P1	Phage minor capsid protein 2	NA
UHGV-0058082_6	eggNOG-mapper	1234679.BN424_1855	Phage Mu protein F like protein	NA
UHGV-0058082_6	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0058082_6	COG	COG2369	NA	NA
UHGV-0058082_7	UniRef90	UniRef90_UPI001EDE861A	phage minor capsid protein	NA
UHGV-0058082_7	eggNOG-mapper	483218.BACPEC_01158	Phage minor capsid protein 2	NA
UHGV-0058082_7	COG	COG2369	NA	NA
UHGV-0058082_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0058082_8	UniRef90	UniRef90_UPI001106A636	minor capsid protein	NA
UHGV-0058082_8	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0058082_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0058082_8	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0058082_8	Structural annotation	PF06152	NA	NA
UHGV-0058082_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0058082_9	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0058082_9	eggNOG-mapper	1282664.H354_06626	NA	NA
UHGV-0058082_9	Structural annotation	PF05133, TIGR01542	NA	NA
UHGV-0058082_11	PHROG	phrog_2695	NA	unknown function
UHGV-0058082_11	UniRef90	UniRef90_A0A174PBX4	SIR2_2 domain-containing protein	NA
UHGV-0058082_11	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0058082_11	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0058082_11	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0058082_12	KOfam	K14059	int; integrase	NA
UHGV-0058082_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0058082_12	UniRef90	UniRef90_A0A174PC01	Site-specific recombinase XerD	NA
UHGV-0058082_12	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0058082_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058082_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058082_12	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0058082_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0058082_13	PHROG	phrog_291	endolysin	lysis
UHGV-0058082_13	UniRef90	UniRef90_A0A415MEE0	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0058082_13	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0058082_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0058082_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0058082_13	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0058082_14	PHROG	phrog_199	holin	lysis
UHGV-0058082_14	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0058082_14	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0058082_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0058082_14	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0058082_14	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0058082_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0058082_15	PHROG	phrog_2566	NA	unknown function
UHGV-0058082_15	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0058082_16	PHROG	phrog_6616	tail protein	tail
UHGV-0058082_16	UniRef90	UniRef90_UPI001BA4B99A	tail fiber domain-containing protein	NA
UHGV-0058082_16	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0058082_16	COG	COG4926	Phage-related protein	NA
UHGV-0058082_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0058082_17	PHROG	phrog_1401	NA	unknown function
UHGV-0058082_17	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0058082_17	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0058082_17	Structural annotation	PF07761	NA	NA
UHGV-0058082_18	PHROG	phrog_1194	NA	unknown function
UHGV-0058082_18	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0058082_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0058082_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0058082_19	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0058082_19	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0058082_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0058082_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0058082_20	PHROG	phrog_8355	NA	unknown function
UHGV-0058082_20	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0058082_20	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0058082_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0058082_20	Structural annotation	PF06854	NA	NA
UHGV-0058082_21	PHROG	phrog_8300	NA	unknown function
UHGV-0058082_21	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0058082_21	Structural annotation	PF06896	NA	NA
UHGV-0058082_22	PHROG	phrog_820	major tail protein	tail
UHGV-0058082_22	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0058082_22	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0058082_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0058082_23	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0058082_23	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0058082_23	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0058082_23	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0058082_23	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0058082_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0058082_24	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0058082_25	PHROG	phrog_8710	NA	unknown function
UHGV-0058082_25	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0058082_25	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0058082_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0058082_26	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0058082_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0058082_27	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0058082_27	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0058082_27	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0058082_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0058082_28	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0058082_30	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0058082_30	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0058082_30	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0058082_30	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0058082_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0058082_30	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0058082_30	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0058082_30	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0058082_31	UniRef90	UniRef90_A0A371IIX7	CopG family transcriptional regulator	NA
UHGV-0058082_31	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0058082_32	UniRef90	UniRef90_A0A3D5LR66	Protein phosphatase	NA
UHGV-0058082_32	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-0058082_32	AcrCatalog	cluster_13845	NA	NA
UHGV-0058082_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0058082_34	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0058082_34	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0058082_34	Pfam	PF14359	NA	DUF4406
UHGV-0058082_34	Structural annotation	PF14359	NA	NA