UHGV-0058093

Genome information

Genome length 38,195 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058093
vOTU ID	vOTU-000538
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52237
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.87
Jumbo phage	No

Genome content
Genome length	38,195 bps
GC content	31.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.98%
Average CDS length	607.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058093_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0058093_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0058093_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058093_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0058093_5	UniRef90	UniRef90_A0A1F6S7X7	Terminase_3 domain-containing protein	NA
UHGV-0058093_5	eggNOG-mapper	937777.Deipe_2067	DNA packaging	NA
UHGV-0058093_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0058093_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058093_5	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058093_6	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058093_6	UniRef90	UniRef90_A0A2V2RWZ8	AP2/ERF domain-containing protein	NA
UHGV-0058093_6	eggNOG-mapper	646529.Desaci_1292	HNH endonuclease	NA
UHGV-0058093_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0058093_7	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0058093_11	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058093_11	UniRef90	UniRef90_UPI000BA65F8A	HNH endonuclease	NA
UHGV-0058093_11	eggNOG-mapper	1444310.JANV01000162_gene1198	HNH endonuclease	NA
UHGV-0058093_11	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0058093_12	UniRef90	UniRef90_A0A4Y8KD91	Coat protein	NA
UHGV-0058093_12	eggNOG-mapper	768066.HELO_2643	P22 coat protein-protein 5 domain protein	NA
UHGV-0058093_14	Structural annotation	PF11134, MF_00923, NF010237, COG4257	NA	NA
UHGV-0058093_18	Structural annotation	PF21567, PF18573	NA	NA
UHGV-0058093_19	Structural annotation	PF10651, NF038114	NA	NA
UHGV-0058093_20	Structural annotation	PF19079	NA	NA
UHGV-0058093_21	Structural annotation	PF14016, MF_00791, NF003967, COG5633	NA	NA
UHGV-0058093_24	Structural annotation	NF008552	NA	NA
UHGV-0058093_25	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0058093_25	PHROG	phrog_7	endolysin	lysis
UHGV-0058093_25	UniRef90	UniRef90_A0A085HGG7	Lysozyme	NA
UHGV-0058093_25	eggNOG-mapper	1005999.GLGR_2130	lysozyme	NA
UHGV-0058093_25	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0058093_25	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0058093_25	HAMAP	MF_04110	Endolysin	NA
UHGV-0058093_25	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0058093_27	PHROG	phrog_1233	NA	unknown function
UHGV-0058093_27	eggNOG-mapper	398512.JQKC01000009_gene587	NA	NA
UHGV-0058093_28	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0058093_28	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0058093_32	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058093_32	UniRef90	UniRef90_A0A1W6JUZ1	Crossover junction endodeoxyribonuclease	NA
UHGV-0058093_32	eggNOG-mapper	1173762.S4TT61_9CAUD	magnesium ion binding	NA
UHGV-0058093_34	PHROG	phrog_221	metallo-phosphoesterase	other
UHGV-0058093_34	UniRef90	UniRef90_A0A5C7LHH1	INTEIN_C_TER domain-containing protein	NA
UHGV-0058093_34	eggNOG-mapper	608538.HTH_0534	phosphoprotein phosphatase activity	NA
UHGV-0058093_34	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0058093_34	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0058093_34	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0058093_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0058093_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0058093_36	UniRef90	UniRef90_R6QDG3	Replicative DNA helicase	NA
UHGV-0058093_36	eggNOG-mapper	521460.Athe_0882	Participates in initiation and elongation during chromosome replication	NA
UHGV-0058093_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0058093_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0058093_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0058093_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0058093_41	Pfam	PF01435	Peptidase family M48	Peptidase_M48
UHGV-0058093_41	COG	COG0501	Zn-dependent protease with chaperone function	NA
UHGV-0058093_41	Structural annotation	PF01435, MF_00997, NF002775, COG0501	NA	NA
UHGV-0058093_47	Pfam	PF13420	Acetyltransferase (GNAT) domain	Acetyltransf_4
UHGV-0058093_47	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0058093_50	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0058093_50	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0058093_50	UniRef90	UniRef90_A0A1B0Z1L3	DNA polymerase I	NA
UHGV-0058093_50	eggNOG-mapper	1283079.M1HMA9_9CAUD	exonuclease activity	NA
UHGV-0058093_50	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0058093_50	Structural annotation	PF02739, PF01367, MF_01192, NF011545, COG0258	NA	NA
UHGV-0058093_53	eggNOG-mapper	547042.BACCOPRO_01599	NA	NA
UHGV-0058093_56	Structural annotation	PF12098, MF_00360, NF041095, COG0347	NA	NA