UHGV-0058104

Genome information

Genome length 30,604 bps

CDS count 44

Completeness 72.46% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058104
vOTU ID	vOTU-034413
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_40746
BioSample	SAMEA2151007
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.12
Jumbo phage	No

Genome content
Genome length	30,604 bps
GC content	54.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.04%
Average CDS length	622.30 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058104_1	PHROG	phrog_27197	NA	unknown function
UHGV-0058104_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0058104_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0058104_4	Structural annotation	PF14120	NA	NA
UHGV-0058104_5	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0058104_5	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0058104_7	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058104_7	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0058104_7	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0058104_7	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0058104_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058104_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058104_8	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0058104_8	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0058104_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058104_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058104_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058104_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058104_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0058104_9	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0058104_9	UniRef90	UniRef90_A0A890GZV9	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0058104_9	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0058104_9	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0058104_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0058104_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0058104_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0058104_10	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0058104_10	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0058104_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0058104_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0058104_13	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0058104_13	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0058104_13	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0058104_13	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0058104_13	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0058104_13	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0058104_13	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0058104_13	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0058104_14	Structural annotation	TIGR04165	NA	NA
UHGV-0058104_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0058104_15	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058104_15	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0058104_15	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0058104_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0058104_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0058104_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0058104_18	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0058104_18	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0058104_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0058104_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0058104_20	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-0058104_20	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0058104_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0058104_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058104_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0058104_20	COG	COG0863	DNA modification methylase	NA
UHGV-0058104_20	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0058104_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0058104_21	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0058104_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0058104_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058104_22	PHROG	phrog_10250	NA	unknown function
UHGV-0058104_22	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0058104_22	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0058104_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058104_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0058104_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0058104_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058104_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0058104_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0058104_23	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0058104_23	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0058104_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0058104_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0058104_24	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0058104_24	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0058104_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0058104_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0058104_24	COG	COG2369	NA	NA
UHGV-0058104_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0058104_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0058104_25	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0058104_25	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0058104_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0058104_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0058104_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0058104_28	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0058104_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0058104_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0058104_30	PHROG	phrog_17977	NA	unknown function
UHGV-0058104_30	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0058104_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0058104_31	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0058104_31	Structural annotation	PF13554	NA	NA
UHGV-0058104_32	PHROG	phrog_885	major tail protein	tail
UHGV-0058104_32	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0058104_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0058104_35	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0058104_35	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0058104_35	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0058104_35	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0058104_35	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0058104_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0058104_35	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0058104_36	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0058104_36	eggNOG-mapper	1120933.ATUY01000002_gene165	NA	NA
UHGV-0058104_36	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0058104_36	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0058104_37	PHROG	phrog_3558	tail protein	tail
UHGV-0058104_37	UniRef90	UniRef90_A0A8B3ALT8	Prophage_tail domain-containing protein	NA
UHGV-0058104_37	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0058104_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0058104_37	COG	COG4926	Phage-related protein	NA
UHGV-0058104_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0058104_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0058104_39	PHROG	phrog_291	endolysin	lysis
UHGV-0058104_39	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0058104_39	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0058104_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0058104_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0058104_39	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0058104_41	PHROG	phrog_15303	NA	unknown function
UHGV-0058104_43	PHROG	phrog_3754	NA	unknown function
UHGV-0058104_43	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0058104_44	PHROG	phrog_21718	NA	unknown function
UHGV-0058104_44	eggNOG-mapper	397290.C810_05210	NA	NA