UHGV-0058130

Genome information

Genome length 35,110 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058130
vOTU ID	vOTU-005563
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63704
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.6
Jumbo phage	No

Genome content
Genome length	35,110 bps
GC content	57.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.85%
Average CDS length	474.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058130_4	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0058130_5	PHROG	phrog_31029	NA	unknown function
UHGV-0058130_6	PHROG	phrog_7704	NA	unknown function
UHGV-0058130_6	UniRef90	UniRef90_UPI0013EF5B35	NA	NA
UHGV-0058130_6	Pfam	PF04448	NA	DUF551
UHGV-0058130_7	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0058130_7	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0058130_9	UniRef90	UniRef90_UPI001485DC17	NA	NA
UHGV-0058130_9	Pfam	PF04448	NA	DUF551
UHGV-0058130_9	Structural annotation	NF011227	NA	NA
UHGV-0058130_12	PHROG	phrog_3810	acetyltransferase	other
UHGV-0058130_12	UniRef90	UniRef90_A0A1Y4F466	N-acetyltransferase domain-containing protein	NA
UHGV-0058130_12	eggNOG-mapper	1117319.PSPO_13652	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	NA
UHGV-0058130_12	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0058130_12	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0058130_13	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0058130_13	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0058130_16	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0058130_16	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0058130_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0058130_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0058130_17	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0058130_17	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0058130_17	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0058130_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0058130_17	COG	COG0863	DNA modification methylase	NA
UHGV-0058130_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0058130_18	eggNOG-mapper	1460640.JCM19046_3532	C-5 cytosine-specific DNA methylase	NA
UHGV-0058130_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0058130_19	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0058130_19	Structural annotation	PF13384, NF040595, COG2886	NA	NA
UHGV-0058130_20	UniRef90	UniRef90_A0A845RBD6	Sigma70_r4 domain-containing protein	NA
UHGV-0058130_20	eggNOG-mapper	742738.HMPREF9460_00773	Helix-turn-helix domain	NA
UHGV-0058130_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0058130_20	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0058130_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0058130_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0058130_21	UniRef90	UniRef90_UPI001EDE8D5F	replicative DNA helicase	NA
UHGV-0058130_21	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0058130_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0058130_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0058130_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0058130_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0058130_22	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058130_22	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-0058130_22	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0058130_22	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0058130_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0058130_22	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0058130_25	UniRef90	UniRef90_UPI001F3A58F7	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0058130_25	eggNOG-mapper	1105031.HMPREF1141_1505	SpoVT / AbrB like domain	NA
UHGV-0058130_25	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0058130_25	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0058130_26	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0058130_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0058130_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058130_34	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0058130_34	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0058130_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058130_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058130_34	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0058130_36	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0058130_36	UniRef90	UniRef90_UPI0018DAF6FE	Ltp family lipoprotein	NA
UHGV-0058130_36	eggNOG-mapper	1224164.B843_05725	Host cell surface-exposed lipoprotein	NA
UHGV-0058130_36	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0058130_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0058130_36	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0058130_37	KOfam	K14059	int; integrase	NA
UHGV-0058130_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0058130_37	UniRef90	UniRef90_A0A1Y4C6T3	Tyr recombinase domain-containing protein	NA
UHGV-0058130_37	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0058130_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0058130_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058130_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058130_37	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0058130_38	PHROG	phrog_16123	NA	unknown function
UHGV-0058130_40	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0058130_40	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0058130_40	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0058130_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0058130_41	PHROG	phrog_15001	endolysin	lysis
UHGV-0058130_41	UniRef90	UniRef90_F4X9E9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058130_41	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0058130_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0058130_41	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0058130_41	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0058130_41	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0058130_43	PHROG	phrog_13256	NA	unknown function
UHGV-0058130_43	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0058130_44	PHROG	phrog_1863	NA	unknown function
UHGV-0058130_44	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0058130_45	PHROG	phrog_30034	NA	unknown function
UHGV-0058130_45	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0058130_45	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0058130_45	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0058130_45	Structural annotation	PF14600	NA	NA
UHGV-0058130_48	PHROG	phrog_18725	NA	unknown function
UHGV-0058130_48	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0058130_49	PHROG	phrog_13879	NA	unknown function
UHGV-0058130_49	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0058130_49	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0058130_50	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0058130_50	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0058130_51	PHROG	phrog_23464	NA	unknown function
UHGV-0058130_51	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0058130_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0058130_51	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0058130_53	eggNOG-mapper	662755.CRES_0875	NA	NA
UHGV-0058130_53	Structural annotation	PF11836	NA	NA
UHGV-0058130_54	PHROG	phrog_88	major tail protein	tail
UHGV-0058130_54	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0058130_54	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0058130_54	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0058130_54	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0058130_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0058130_55	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0058130_55	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0058130_55	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0058130_55	Structural annotation	TIGR01725	NA	NA
UHGV-0058130_56	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0058130_56	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0058130_57	PHROG	phrog_19734	NA	unknown function
UHGV-0058130_57	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0058130_57	eggNOG-mapper	999413.HMPREF1094_02006	NA	NA
UHGV-0058130_57	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0058130_58	PHROG	phrog_2550	NA	unknown function
UHGV-0058130_58	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0058130_58	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0058130_58	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0058130_59	PHROG	phrog_10	major head protein	head and packaging
UHGV-0058130_59	UniRef90	UniRef90_U2R3I5	Phage capsid family protein	NA
UHGV-0058130_59	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0058130_59	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0058130_59	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0058130_59	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0058130_59	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0058130_59	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0058130_61	KOfam	K06904	NA	NA
UHGV-0058130_61	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0058130_61	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0058130_61	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0058130_61	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0058130_61	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0058130_61	COG	COG3740	Phage head maturation protease	NA
UHGV-0058130_61	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0058130_62	PHROG	phrog_12	portal protein	head and packaging
UHGV-0058130_62	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0058130_62	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0058130_62	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0058130_62	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0058130_62	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0058130_62	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0058130_64	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0058130_64	UniRef90	UniRef90_U2R2I8	Putative phage terminase, large subunit	NA
UHGV-0058130_64	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0058130_64	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0058130_64	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0058130_64	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0058130_64	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0058130_65	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0058130_65	UniRef90	UniRef90_A0A098AUX1	Phage terminase, small subunit	NA
UHGV-0058130_65	eggNOG-mapper	1226322.HMPREF1545_00112	Phage terminase, small subunit	NA
UHGV-0058130_65	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0058130_65	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0058130_65	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0058130_66	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0058130_66	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058130_66	UniRef90	UniRef90_U2R3I0	HNH endonuclease domain protein	NA
UHGV-0058130_66	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0058130_66	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0058130_66	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0058130_66	Structural annotation	TIGR02646	NA	NA
UHGV-0058130_67	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058130_67	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0058130_67	Structural annotation	PF01446, NF041486	NA	NA