UHGV-0058252

Genome information

Genome length 36,897 bps

CDS count 61

Completeness 89.76% (medium-quality)

geNomad score 0.9541

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058252
vOTU ID	vOTU-038826
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64964
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9541
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.56
Jumbo phage	No

Genome content
Genome length	36,897 bps
GC content	54.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.54%
Average CDS length	559.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058252_1	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0058252_1	UniRef90	UniRef90_A0A3B9Q8K0	Transcriptional regulator	NA
UHGV-0058252_1	eggNOG-mapper	762983.HMPREF9444_01504	DNA excision	NA
UHGV-0058252_1	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0058252_1	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0058252_1	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0058252_3	PHROG	phrog_210	NA	unknown function
UHGV-0058252_3	UniRef90	UniRef90_UPI00093FF5B5	NA	NA
UHGV-0058252_3	eggNOG-mapper	1470593.BW43_03637	NA	NA
UHGV-0058252_3	Pfam	PF10065	NA	DUF2303
UHGV-0058252_3	COG	COG5532	NA	NA
UHGV-0058252_3	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0058252_4	PHROG	phrog_204	NA	unknown function
UHGV-0058252_4	eggNOG-mapper	1286631.X805_04650	NA	NA
UHGV-0058252_5	PHROG	phrog_2449	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058252_5	UniRef90	UniRef90_A0A849BDJ3	Phage recombination protein Bet	NA
UHGV-0058252_5	eggNOG-mapper	637389.Acaty_c1934	TIGRFAM Phage recombination protein Bet	NA
UHGV-0058252_5	Pfam	PF03837	RecT family	RecT
UHGV-0058252_5	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0058252_5	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0058252_7	PHROG	phrog_821	transcriptional regulator	transcription regulation
UHGV-0058252_7	UniRef90	UniRef90_UPI0013F5A34F	Rha family transcriptional regulator	NA
UHGV-0058252_7	eggNOG-mapper	742821.HMPREF9464_02166	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0058252_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0058252_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0058252_7	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0058252_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0058252_7	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0058252_9	PHROG	phrog_7839	NA	unknown function
UHGV-0058252_9	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0058252_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0058252_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0058252_18	UniRef90	UniRef90_UPI0013F63C2F	LexA family transcriptional regulator	NA
UHGV-0058252_18	eggNOG-mapper	1117958.PE143B_0121595	Peptidase S24-like	NA
UHGV-0058252_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058252_18	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0058252_18	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0058252_18	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0058252_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058252_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0058252_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0058252_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0058252_20	UniRef90	UniRef90_UPI00093F58F5	ATP-binding protein	NA
UHGV-0058252_20	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-0058252_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0058252_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0058252_20	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0058252_29	Structural annotation	PF06530, NF007225	NA	NA
UHGV-0058252_34	PHROG	phrog_2232	NA	unknown function
UHGV-0058252_34	UniRef90	UniRef90_A0A6N8AI53	NA	NA
UHGV-0058252_34	eggNOG-mapper	216142.LT40_00195	NA	NA
UHGV-0058252_34	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0058252_34	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0058252_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0058252_35	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0058252_35	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0058252_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0058252_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0058252_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0058252_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0058252_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0058252_36	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0058252_36	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0058252_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0058252_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0058252_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0058252_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0058252_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0058252_37	UniRef90	UniRef90_A0A7X9EEF5	Phage portal protein (Fragment)	NA
UHGV-0058252_37	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-0058252_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0058252_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0058252_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0058252_38	UniRef90	UniRef90_A0A6L6YJD1	Phage portal protein	NA
UHGV-0058252_38	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-0058252_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0058252_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0058252_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0058252_38	Structural annotation	PF04860, TIGR01537, COG4695	NA	NA
UHGV-0058252_39	KOfam	K06904	NA	NA
UHGV-0058252_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0058252_39	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0058252_39	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0058252_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0058252_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0058252_39	COG	COG3740	Phage head maturation protease	NA
UHGV-0058252_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0058252_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0058252_40	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0058252_40	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0058252_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0058252_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0058252_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0058252_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0058252_41	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0058252_41	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0058252_41	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-0058252_41	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0058252_41	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0058252_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0058252_42	PHROG	phrog_25	head closure Hc1	connector
UHGV-0058252_42	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0058252_42	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0058252_42	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0058252_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0058252_43	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0058252_43	UniRef90	UniRef90_A0A1Y0FI51	Aminotransferase	NA
UHGV-0058252_43	Structural annotation	TIGR01725	NA	NA
UHGV-0058252_44	PHROG	phrog_209	portal protein	head and packaging
UHGV-0058252_44	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0058252_44	Structural annotation	PF09646	NA	NA
UHGV-0058252_45	PHROG	phrog_165	tail sheath	tail
UHGV-0058252_45	UniRef90	UniRef90_UPI0016607B39	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0058252_45	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0058252_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0058252_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0058252_45	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0058252_45	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0058252_46	PHROG	phrog_185	tail tube protein	tail
UHGV-0058252_46	UniRef90	UniRef90_A0A1B9KUT8	Phage tail protein	NA
UHGV-0058252_46	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0058252_46	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0058252_46	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0058252_48	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0058252_48	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0058252_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0058252_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0058252_48	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0058252_49	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0058252_49	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0058252_49	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0058252_49	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0058252_49	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0058252_49	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0058252_50	PHROG	phrog_177	tail protein	tail
UHGV-0058252_50	UniRef90	UniRef90_A0A6I1NHQ3	Baseplate protein	NA
UHGV-0058252_50	eggNOG-mapper	160488.PP_3863	tail protein	NA
UHGV-0058252_50	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0058252_50	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0058252_50	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0058252_51	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0058252_51	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0058252_51	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0058252_51	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0058252_51	COG	COG4384	NA	NA
UHGV-0058252_51	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0058252_52	PHROG	phrog_180	tail protein	tail
UHGV-0058252_52	UniRef90	UniRef90_A0A560D0U5	Phage gp46-like protein	NA
UHGV-0058252_52	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0058252_52	Pfam	PF07409	NA	GP46
UHGV-0058252_52	COG	COG4381	NA	NA
UHGV-0058252_52	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0058252_53	PHROG	phrog_6	baseplate protein	tail
UHGV-0058252_53	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0058252_53	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0058252_53	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0058252_53	COG	COG3299	NA	NA
UHGV-0058252_53	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0058252_54	PHROG	phrog_203	tail protein	tail
UHGV-0058252_54	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0058252_54	eggNOG-mapper	883.DvMF_0750	NA	NA
UHGV-0058252_54	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0058252_54	COG	COG3778	NA	NA
UHGV-0058252_54	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0058252_55	UniRef90	UniRef90_UPI00194F0D46	pectinesterase family protein	NA
UHGV-0058252_55	eggNOG-mapper	411464.DESPIG_00858	NA	NA
UHGV-0058252_56	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0058252_56	UniRef90	UniRef90_UPI001D0AA195	phage tail assembly chaperone	NA
UHGV-0058252_56	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0058252_56	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0058252_56	Structural annotation	PF16778	NA	NA
UHGV-0058252_57	PHROG	phrog_1443	NA	unknown function
UHGV-0058252_57	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0058252_58	PHROG	phrog_920	holin	lysis
UHGV-0058252_59	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0058252_59	PHROG	phrog_7	endolysin	lysis
UHGV-0058252_59	UniRef90	UniRef90_C1D7V6	Lysozyme	NA
UHGV-0058252_59	eggNOG-mapper	557598.LHK_01558	Phage lysozyme	NA
UHGV-0058252_59	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0058252_59	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0058252_59	HAMAP	MF_04110	Endolysin	NA
UHGV-0058252_59	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0058252_60	UniRef90	UniRef90_UPI00195FC0AC	NA	NA
UHGV-0058252_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0058252_61	UniRef90	UniRef90_A0A3B9Q960	Integrase	NA
UHGV-0058252_61	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-0058252_61	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0058252_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058252_61	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA