UHGV-0058273

Genome information

Genome length 27,516 bps

CDS count 29

Completeness 71.65% (medium-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058273
vOTU ID	vOTU-034252
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_57694
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.72
Jumbo phage	No

Genome content
Genome length	27,516 bps
GC content	39.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	89.65%
Average CDS length	852.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058273_1	Structural annotation	PF13451	NA	NA
UHGV-0058273_3	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0058273_4	UniRef90	UniRef90_A0A3D4T790	YopX domain-containing protein	NA
UHGV-0058273_9	UniRef90	UniRef90_UPI000C1B9F0E	NA	NA
UHGV-0058273_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0058273_10	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058273_10	UniRef90	UniRef90_A0A7X9EDH9	Metallophos domain-containing protein	NA
UHGV-0058273_10	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0058273_10	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0058273_10	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0058273_10	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0058273_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0058273_11	UniRef90	UniRef90_A0A7X9GQF9	NA	NA
UHGV-0058273_11	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-0058273_11	Pfam	PF14359	NA	DUF4406
UHGV-0058273_11	Structural annotation	PF14359, MF_03036, NF038232, COG3613	NA	NA
UHGV-0058273_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0058273_12	UniRef90	UniRef90_A0A8J6P944	Helix-turn-helix domain-containing protein	NA
UHGV-0058273_12	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0058273_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0058273_12	Structural annotation	PF07141	NA	NA
UHGV-0058273_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058273_13	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0058273_13	UniRef90	UniRef90_UPI0004130EC4	phage terminase large subunit	NA
UHGV-0058273_13	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-0058273_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058273_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058273_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0058273_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0058273_14	UniRef90	UniRef90_A0A2K9P4K6	Sigma-70 region 2	NA
UHGV-0058273_14	eggNOG-mapper	1507.HMPREF0262_03465	NA	NA
UHGV-0058273_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0058273_15	KOfam	K07584	NA	NA
UHGV-0058273_15	PHROG	phrog_4478	peptidase	other
UHGV-0058273_15	UniRef90	UniRef90_UPI001E4C016E	ribosomal-processing cysteine protease Prp	NA
UHGV-0058273_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0058273_15	COG	COG2868	NA	NA
UHGV-0058273_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0058273_16	PHROG	phrog_13908	NA	unknown function
UHGV-0058273_17	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0058273_17	UniRef90	UniRef90_UPI000B8B3F29	N4-gp56 family major capsid protein	NA
UHGV-0058273_17	eggNOG-mapper	1507.HMPREF0262_03463	NA	NA
UHGV-0058273_17	Pfam	PF13252	NA	DUF4043
UHGV-0058273_17	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0058273_17	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0058273_18	PHROG	phrog_15239	NA	unknown function
UHGV-0058273_18	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0058273_20	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0058273_20	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0058273_20	Structural annotation	PF11134, NF038128, COG5276	NA	NA
UHGV-0058273_23	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0058273_23	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0058273_23	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0058273_24	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0058273_24	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0058273_24	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0058273_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0058273_24	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0058273_25	PHROG	phrog_8852	NA	unknown function
UHGV-0058273_26	PHROG	phrog_134	NA	unknown function
UHGV-0058273_26	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0058273_26	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0058273_27	PHROG	phrog_199	holin	lysis
UHGV-0058273_27	UniRef90	UniRef90_A0A173VKF9	Holin	NA
UHGV-0058273_27	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0058273_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0058273_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0058273_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0058273_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0058273_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0058273_28	PHROG	phrog_435	endolysin	lysis
UHGV-0058273_28	UniRef90	UniRef90_R6NQL7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058273_28	eggNOG-mapper	1497679.EP56_07690	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058273_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0058273_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058273_29	KOfam	K14059	int; integrase	NA
UHGV-0058273_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0058273_29	UniRef90	UniRef90_A0A1C6GKE6	Tyrosine recombinase XerD	NA
UHGV-0058273_29	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0058273_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058273_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0058273_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA