UHGV-0058338

Genome information

Genome length 30,194 bps

CDS count 39

Completeness 70.35% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058338
vOTU ID	vOTU-018209
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_61990
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.15
Jumbo phage	No

Genome content
Genome length	30,194 bps
GC content	56.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.79%
Average CDS length	707.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058338_1	UniRef90	UniRef90_A0A3R6VS09	NA	NA
UHGV-0058338_1	eggNOG-mapper	397291.C804_00120	NA	NA
UHGV-0058338_3	UniRef90	UniRef90_A0A3D1LH20	Polya polymerase	NA
UHGV-0058338_3	eggNOG-mapper	1007096.BAGW01000018_gene677	NA	NA
UHGV-0058338_3	Structural annotation	NF008146, COG1925	NA	NA
UHGV-0058338_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0058338_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058338_5	UniRef90	UniRef90_R5ILT8	HTH cro/C1-type domain-containing protein	NA
UHGV-0058338_5	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0058338_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058338_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0058338_5	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0058338_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058338_9	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0058338_9	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0058338_9	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0058338_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058338_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058338_9	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0058338_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0058338_10	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0058338_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0058338_11	KOfam	K07584	NA	NA
UHGV-0058338_11	PHROG	phrog_4478	peptidase	other
UHGV-0058338_11	UniRef90	UniRef90_R5J236	Putative ribosomal protein	NA
UHGV-0058338_11	eggNOG-mapper	935948.KE386494_gene347	Cysteine protease Prp	NA
UHGV-0058338_11	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0058338_11	COG	COG2868	NA	NA
UHGV-0058338_11	Structural annotation	PF04327, NF011125, COG2868	NA	NA
UHGV-0058338_12	PHROG	phrog_13908	NA	unknown function
UHGV-0058338_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0058338_13	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0058338_13	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0058338_13	Pfam	PF13252	NA	DUF4043
UHGV-0058338_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0058338_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0058338_14	PHROG	phrog_15239	NA	unknown function
UHGV-0058338_15	PHROG	phrog_12105	NA	unknown function
UHGV-0058338_15	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0058338_16	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0058338_16	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0058338_16	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0058338_17	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0058338_17	UniRef90	UniRef90_R5ILW4	Peptidase S74 domain-containing protein	NA
UHGV-0058338_17	eggNOG-mapper	1274524.BSONL12_13206	NA	NA
UHGV-0058338_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0058338_17	Structural annotation	PF10248	NA	NA
UHGV-0058338_19	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0058338_20	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-0058338_21	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0058338_21	PHROG	phrog_819	tail protein	tail
UHGV-0058338_21	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0058338_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0058338_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0058338_21	Structural annotation	PF06903	NA	NA
UHGV-0058338_22	PHROG	phrog_37900	NA	unknown function
UHGV-0058338_22	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0058338_22	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0058338_22	Pfam	PF19789	NA	DUF6273
UHGV-0058338_22	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0058338_22	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0058338_23	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0058338_23	Structural annotation	PF10618	NA	NA
UHGV-0058338_26	Structural annotation	PF10651, NF011813, COG5513	NA	NA
UHGV-0058338_28	PHROG	phrog_35541	NA	unknown function
UHGV-0058338_28	UniRef90	UniRef90_A0A3D6B2G4	Mtd_N domain-containing protein	NA
UHGV-0058338_28	eggNOG-mapper	411470.RUMGNA_00120	NA	NA
UHGV-0058338_28	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0058338_28	Structural annotation	PF18454	NA	NA
UHGV-0058338_29	PHROG	phrog_35541	NA	unknown function
UHGV-0058338_29	eggNOG-mapper	411470.RUMGNA_02068	NA	NA
UHGV-0058338_30	PHROG	phrog_38190	NA	unknown function
UHGV-0058338_31	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0058338_31	eggNOG-mapper	913865.DOT_2883	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0058338_31	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0058338_32	PHROG	phrog_37900	NA	unknown function
UHGV-0058338_32	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0058338_32	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0058338_32	Pfam	PF19789	NA	DUF6273
UHGV-0058338_32	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0058338_32	Structural annotation	PF19789	NA	NA
UHGV-0058338_33	PHROG	phrog_29409	NA	unknown function
UHGV-0058338_35	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0058338_35	PHROG	phrog_30034	NA	unknown function
UHGV-0058338_35	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0058338_35	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0058338_35	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0058338_35	Structural annotation	PF14600	NA	NA
UHGV-0058338_36	PHROG	phrog_4105	NA	unknown function
UHGV-0058338_38	PHROG	phrog_9589	endolysin	lysis
UHGV-0058338_38	UniRef90	UniRef90_UPI000B195CAC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0058338_38	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0058338_38	Pfam	PF05257	CHAP domain	CHAP
UHGV-0058338_38	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0058338_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0058338_38	Structural annotation	PF18342, PF00877, TIGR02594, NF040678, COG4991, COG4632	NA	NA