UHGV-0058358

Genome information

Genome length 31,084 bps

CDS count 46

Completeness 74.40% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058358
vOTU ID	vOTU-040353
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_39950
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.54
Jumbo phage	No

Genome content
Genome length	31,084 bps
GC content	40.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.93%
Average CDS length	623.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058358_1	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0058358_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0058358_2	PHROG	phrog_11105	NA	unknown function
UHGV-0058358_4	PHROG	phrog_18110	NA	unknown function
UHGV-0058358_4	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0058358_4	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0058358_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0058358_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0058358_4	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0058358_4	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0058358_5	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0058358_5	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0058358_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0058358_5	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0058358_6	PHROG	phrog_19074	NA	unknown function
UHGV-0058358_6	UniRef90	UniRef90_A0A413QHE6	Phage tail tape measure protein	NA
UHGV-0058358_6	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0058358_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0058358_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0058358_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0058358_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0058358_7	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0058358_7	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0058358_8	PHROG	phrog_706	NA	unknown function
UHGV-0058358_8	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0058358_8	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0058358_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0058358_8	Structural annotation	PF06854	NA	NA
UHGV-0058358_9	PHROG	phrog_4450	NA	unknown function
UHGV-0058358_9	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0058358_9	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0058358_9	Pfam	PF20378	NA	DUF6673
UHGV-0058358_9	Structural annotation	PF20378	NA	NA
UHGV-0058358_10	PHROG	phrog_3099	NA	unknown function
UHGV-0058358_10	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0058358_10	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0058358_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0058358_11	PHROG	phrog_3266	tail completion	connector
UHGV-0058358_11	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0058358_11	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0058358_11	Structural annotation	PF12691	NA	NA
UHGV-0058358_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0058358_12	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0058358_12	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0058358_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0058358_12	Structural annotation	PF11114	NA	NA
UHGV-0058358_13	PHROG	phrog_3366	NA	unknown function
UHGV-0058358_13	eggNOG-mapper	1151292.QEW_4533	NA	NA
UHGV-0058358_13	Pfam	PF20536	NA	DUF6751
UHGV-0058358_13	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0058358_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0058358_14	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0058358_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0058358_15	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0058358_15	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0058358_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0058358_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0058358_16	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0058358_16	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0058358_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0058358_16	Structural annotation	PF06810	NA	NA
UHGV-0058358_17	PHROG	phrog_419	NA	unknown function
UHGV-0058358_17	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0058358_17	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0058358_17	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0058358_18	UniRef90	UniRef90_A0A373KYU2	Glutamyl-tRNA amidotransferase	NA
UHGV-0058358_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0058358_19	UniRef90	UniRef90_A0A373KZU7	Capsid protein	NA
UHGV-0058358_19	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0058358_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0058358_19	COG	COG2369	NA	NA
UHGV-0058358_19	Structural annotation	PF06152	NA	NA
UHGV-0058358_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0058358_20	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0058358_20	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0058358_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0058358_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058358_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0058358_21	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0058358_21	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0058358_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058358_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0058358_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058358_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0058358_23	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0058358_23	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0058358_23	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0058358_23	eggNOG-mapper	1123489.AUAN01000019_gene1519	Participates in transcription elongation, termination and antitermination	NA
UHGV-0058358_23	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0058358_23	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0058358_23	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0058358_24	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0058358_24	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0058358_24	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0058358_24	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0058358_24	Structural annotation	PF11985	NA	NA
UHGV-0058358_25	PHROG	phrog_25462	NA	unknown function
UHGV-0058358_25	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0058358_25	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0058358_25	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0058358_27	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0058358_27	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0058358_27	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0058358_27	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0058358_27	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0058358_27	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0058358_28	PHROG	phrog_286	NA	unknown function
UHGV-0058358_28	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0058358_28	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0058358_28	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0058358_28	Structural annotation	PF06252	NA	NA
UHGV-0058358_29	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0058358_30	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0058358_30	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0058358_30	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0058358_30	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0058358_30	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0058358_30	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0058358_30	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0058358_32	PHROG	phrog_5671	NA	unknown function
UHGV-0058358_32	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0058358_34	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0058358_34	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0058358_34	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0058358_34	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0058358_34	Pfam	PF13401	AAA domain	AAA_22
UHGV-0058358_34	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0058358_34	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0058358_35	PHROG	phrog_310	transposase	integration and excision
UHGV-0058358_35	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0058358_35	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0058358_35	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0058358_35	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0058358_35	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0058358_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0058358_35	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0058358_36	Structural annotation	PF10735	NA	NA
UHGV-0058358_39	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0058358_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058358_39	UniRef90	UniRef90_A0A1C6GZN2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0058358_39	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-0058358_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058358_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058358_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0058358_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0058358_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0058358_40	UniRef90	UniRef90_A0A1C6GZH6	LexA repressor	NA
UHGV-0058358_40	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0058358_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0058358_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0058358_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0058358_40	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0058358_44	eggNOG-mapper	1410650.JHWL01000017_gene2365	NA	NA
UHGV-0058358_44	Pfam	PF20234	NA	DUF6591
UHGV-0058358_44	Structural annotation	PF20234	NA	NA
UHGV-0058358_45	UniRef90	UniRef90_A0A6I3PQP9	DZANK-type domain-containing protein	NA
UHGV-0058358_45	eggNOG-mapper	1469948.JPNB01000002_gene2828	NA	NA
UHGV-0058358_45	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0058358_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0058358_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058358_46	UniRef90	UniRef90_A0A1Q6S5H3	HTH cro/C1-type domain-containing protein	NA
UHGV-0058358_46	eggNOG-mapper	1262449.CP6013_2053	Helix-turn-helix XRE-family like proteins	NA
UHGV-0058358_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0058358_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058358_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058358_46	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA