UHGV-0058444

Genome information

Genome length 30,165 bps

CDS count 47

Completeness 79.42% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058444
vOTU ID	vOTU-034794
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63199
BioSample	SAMEA2338691
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.22
Jumbo phage	No

Genome content
Genome length	30,165 bps
GC content	43.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.73%
Average CDS length	600.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058444_1	PHROG	phrog_15077	NA	unknown function
UHGV-0058444_1	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0058444_3	PHROG	phrog_7566	NA	unknown function
UHGV-0058444_3	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0058444_3	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0058444_4	PHROG	phrog_8470	NA	unknown function
UHGV-0058444_4	UniRef90	UniRef90_UPI0018A0B53D	PcfJ domain-containing protein	NA
UHGV-0058444_4	eggNOG-mapper	1235790.C805_00306	PcfJ-like protein	NA
UHGV-0058444_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0058444_4	Structural annotation	PF14284	NA	NA
UHGV-0058444_5	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0058444_5	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0058444_6	COG	COG0328	Ribonuclease HI	NA
UHGV-0058444_6	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0058444_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058444_7	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0058444_7	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0058444_10	PHROG	phrog_11237	NA	unknown function
UHGV-0058444_10	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0058444_11	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0058444_11	PHROG	phrog_2668	NA	unknown function
UHGV-0058444_11	UniRef90	UniRef90_UPI001923DEFA	restriction endonuclease subunit S	NA
UHGV-0058444_11	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0058444_11	PADLOC	Specificity_I_00036	Type I specificity subunit	RM
UHGV-0058444_11	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0058444_11	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0058444_12	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0058444_12	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0058444_12	UniRef90	UniRef90_A0A417EL32	N-6 DNA methylase	NA
UHGV-0058444_12	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0058444_12	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0058444_12	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0058444_12	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0058444_12	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0058444_20	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0058444_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058444_20	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0058444_20	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0058444_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058444_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058444_20	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0058444_22	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0058444_22	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0058444_22	UniRef90	UniRef90_A0A1M6B7T2	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0058444_22	eggNOG-mapper	410358.Mlab_0037	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0058444_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058444_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0058444_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0058444_25	PHROG	phrog_1220	head protein	head and packaging
UHGV-0058444_25	UniRef90	UniRef90_Q73EE6	Phage structural protein, truncation	NA
UHGV-0058444_25	eggNOG-mapper	755731.Clo1100_3573	COG NOG18825 non supervised orthologous group	NA
UHGV-0058444_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0058444_26	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0058444_26	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0058444_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0058444_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0058444_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0058444_27	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0058444_27	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-0058444_27	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0058444_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0058444_27	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0058444_28	PHROG	phrog_5218	NA	unknown function
UHGV-0058444_28	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0058444_28	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0058444_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0058444_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0058444_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0058444_30	PHROG	phrog_88	major tail protein	tail
UHGV-0058444_30	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0058444_30	eggNOG-mapper	1120971.AUCA01000066_gene599	Phage tail tube protein	NA
UHGV-0058444_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0058444_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0058444_31	Structural annotation	PF05657	NA	NA
UHGV-0058444_32	Structural annotation	TIGR01725	NA	NA
UHGV-0058444_33	UniRef90	UniRef90_A0A417W8T5	Head-tail adaptor protein	NA
UHGV-0058444_33	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0058444_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0058444_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0058444_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0058444_34	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0058444_34	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0058444_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0058444_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0058444_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0058444_35	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0058444_35	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0058444_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0058444_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0058444_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0058444_35	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0058444_36	KOfam	K06904	NA	NA
UHGV-0058444_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0058444_36	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0058444_36	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0058444_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0058444_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0058444_36	COG	COG3740	Phage head maturation protease	NA
UHGV-0058444_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0058444_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0058444_37	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-0058444_37	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0058444_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0058444_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0058444_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0058444_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0058444_38	UniRef90	UniRef90_R7A0H4	Terminase	NA
UHGV-0058444_38	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0058444_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0058444_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0058444_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0058444_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0058444_41	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0058444_41	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0058444_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0058444_42	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0058444_42	UniRef90	UniRef90_A0A417W8X1	HNH endonuclease	NA
UHGV-0058444_42	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0058444_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0058444_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0058444_42	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0058444_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0058444_43	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0058444_43	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0058444_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0058444_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0058444_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0058444_44	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0058444_44	PHROG	phrog_435	endolysin	lysis
UHGV-0058444_44	UniRef90	UniRef90_A0A6L5Y0L2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058444_44	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0058444_44	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0058444_44	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0058444_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058444_44	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0058444_45	PHROG	phrog_1863	NA	unknown function
UHGV-0058444_45	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0058444_46	PHROG	phrog_881	holin	lysis
UHGV-0058444_46	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0058444_46	eggNOG-mapper	1095750.HMPREF9970_2289	Putative phage holin Dp-1	NA
UHGV-0058444_46	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0058444_46	Structural annotation	PF16938	NA	NA