UHGV-0058572

Genome information

Genome length 49,397 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9472

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058572
vOTU ID	vOTU-061717
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31812
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9472
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length	49,397 bps
GC content	41.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.38%
Average CDS length	655.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058572_1	eggNOG-mapper	1262914.BN533_00057	NA	NA
UHGV-0058572_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0058572_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0058572_2	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0058572_2	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0058572_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0058572_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0058572_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0058572_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0058572_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0058572_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0058572_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058572_4	UniRef90	UniRef90_UPI001B3918A3	helix-turn-helix domain-containing protein	NA
UHGV-0058572_4	eggNOG-mapper	658086.HMPREF0994_04276	Helix-turn-helix XRE-family like proteins	NA
UHGV-0058572_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058572_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058572_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0058572_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0058572_5	UniRef90	UniRef90_A0A1I5RRL5	Helix-turn-helix domain-containing protein	NA
UHGV-0058572_5	eggNOG-mapper	658086.HMPREF0994_04275	NA	NA
UHGV-0058572_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0058572_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0058572_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_7	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-0058572_7	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-0058572_7	Structural annotation	PF06573	NA	NA
UHGV-0058572_8	eggNOG-mapper	1274374.CBLK010000060_gene530	NA	NA
UHGV-0058572_13	Pfam	PF01476	LysM domain	LysM
UHGV-0058572_13	COG	COG1388	LysM repeat	NA
UHGV-0058572_14	PHROG	phrog_3777	NA	unknown function
UHGV-0058572_14	UniRef90	UniRef90_A0A848BTT8	NA	NA
UHGV-0058572_14	eggNOG-mapper	1203606.HMPREF1526_01680	NA	NA
UHGV-0058572_14	Pfam	PF12957	NA	DUF3846
UHGV-0058572_14	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0058572_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058572_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0058572_16	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0058572_16	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058572_16	UniRef90	UniRef90_A0A316SJK4	SMC_N domain-containing protein	NA
UHGV-0058572_16	eggNOG-mapper	1121342.AUCO01000012_gene1723	nuclear chromosome segregation	NA
UHGV-0058572_16	PADLOC	AAA_15	NA	NA
UHGV-0058572_16	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0058572_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0058572_16	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0058572_18	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_18	UniRef90	UniRef90_UPI001C05F550	recombinase RecT	NA
UHGV-0058572_18	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0058572_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0058572_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0058572_19	UniRef90	UniRef90_UPI0013E0D4F3	MBL fold metallo-hydrolase	NA
UHGV-0058572_19	eggNOG-mapper	926561.KB900623_gene748	Metallo-beta-lactamase superfamily	NA
UHGV-0058572_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0058572_19	dbAPIS	APIS066	NA	NA
UHGV-0058572_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0058572_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0058572_20	PHROG	phrog_11269	NA	unknown function
UHGV-0058572_20	eggNOG-mapper	1121428.DESHY_20121___1	NA	NA
UHGV-0058572_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_21	UniRef90	UniRef90_A0A212LXZ1	NA	NA
UHGV-0058572_21	eggNOG-mapper	1122973.KB904232_gene344	NA	NA
UHGV-0058572_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0058572_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058572_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_23	UniRef90	UniRef90_A0A3G9HAR8	Single-stranded DNA-binding protein	NA
UHGV-0058572_23	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0058572_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058572_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058572_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058572_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058572_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0058572_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0058572_24	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_24	UniRef90	UniRef90_UPI000AA4D48E	ParB/RepB/Spo0J family partition protein	NA
UHGV-0058572_24	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0058572_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058572_24	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0058572_24	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0058572_24	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0058572_25	PHROG	phrog_5984	NA	unknown function
UHGV-0058572_25	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0058572_25	Structural annotation	PF19561	NA	NA
UHGV-0058572_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058572_27	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-0058572_27	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0058572_27	Pfam	PF06356	NA	DUF1064
UHGV-0058572_27	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0058572_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0058572_28	eggNOG-mapper	420246.GTNG_2841	NA	NA
UHGV-0058572_28	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0058572_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0058572_30	UniRef90	UniRef90_A0A2E5KQ25	ParB domain-containing protein	NA
UHGV-0058572_30	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0058572_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0058572_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058572_30	COG	COG0863	DNA modification methylase	NA
UHGV-0058572_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0058572_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0058572_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0058572_31	UniRef90	UniRef90_A0A3A8ZMY9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0058572_31	eggNOG-mapper	1122917.KB899683_gene4786	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0058572_31	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0058572_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0058572_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0058572_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0058572_31	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0058572_32	UniRef90	UniRef90_A0A7S9GL20	NA	NA
UHGV-0058572_32	eggNOG-mapper	688245.CtCNB1_3550	NA	NA
UHGV-0058572_32	Pfam	PF14022	NA	DUF4238
UHGV-0058572_33	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0058572_33	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0058572_33	UniRef90	UniRef90_A0A7C8GRI9	Terminase small subunit	NA
UHGV-0058572_33	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0058572_33	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0058572_34	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0058572_34	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0058572_34	UniRef90	UniRef90_A0A3C1INY8	Terminase	NA
UHGV-0058572_34	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0058572_34	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0058572_34	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0058572_34	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0058572_34	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0058572_36	PHROG	phrog_21	portal protein	head and packaging
UHGV-0058572_36	UniRef90	UniRef90_A0A3C1INQ6	Phage portal protein	NA
UHGV-0058572_36	eggNOG-mapper	883156.HMPREF9282_01238	Phage portal protein, lambda family	NA
UHGV-0058572_36	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0058572_36	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0058572_36	COG	COG5511	Phage capsid protein	NA
UHGV-0058572_36	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0058572_37	KOfam	K06904	NA	NA
UHGV-0058572_37	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0058572_37	UniRef90	UniRef90_A0A3C1INU1	Mu-like_gpT domain-containing protein	NA
UHGV-0058572_37	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0058572_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0058572_37	COG	COG3087	Cell division protein FtsN	NA
UHGV-0058572_37	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0058572_38	PHROG	phrog_122	head decoration	head and packaging
UHGV-0058572_38	UniRef90	UniRef90_A0A3C1IQP2	DNA breaking-rejoining protein	NA
UHGV-0058572_38	Pfam	PF09956	NA	DUF2190
UHGV-0058572_38	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0058572_38	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0058572_39	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0058572_40	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0058572_40	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0058572_41	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0058572_42	PHROG	phrog_290	minor tail protein	tail
UHGV-0058572_42	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0058572_42	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-0058572_42	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0058572_42	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0058572_45	PHROG	phrog_30973	NA	unknown function
UHGV-0058572_45	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-0058572_45	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-0058572_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0058572_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0058572_46	UniRef90	UniRef90_UPI001032B7DB	phage tail protein	NA
UHGV-0058572_46	eggNOG-mapper	1280706.AUJE01000003_gene2251	NA	NA
UHGV-0058572_46	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0058572_47	PHROG	phrog_18	minor tail protein	tail
UHGV-0058572_47	UniRef90	UniRef90_UPI001032C9EC	NA	NA
UHGV-0058572_47	eggNOG-mapper	1280706.AUJE01000003_gene2250	Phage minor tail protein L	NA
UHGV-0058572_47	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0058572_47	COG	COG4672	Phage tail protein	NA
UHGV-0058572_47	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0058572_48	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0058572_48	PHROG	phrog_329	minor tail protein	tail
UHGV-0058572_48	UniRef90	UniRef90_A0A316S7W5	NlpC/P60 domain-containing protein	NA
UHGV-0058572_48	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-0058572_48	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0058572_48	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0058572_48	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0058572_49	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0058572_49	UniRef90	UniRef90_A0A316S7W9	Phage-tail_3 domain-containing protein	NA
UHGV-0058572_49	eggNOG-mapper	1280706.AUJE01000003_gene2248	cellulase activity	NA
UHGV-0058572_49	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0058572_49	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0058572_49	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0058572_49	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0058572_50	eggNOG-mapper	1144310.PMI07_000885	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0058572_50	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0058572_54	KOfam	K14059	int; integrase	NA
UHGV-0058572_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0058572_54	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0058572_54	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0058572_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058572_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058572_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0058572_55	PHROG	phrog_4105	NA	unknown function
UHGV-0058572_55	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0058572_56	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-0058572_57	PHROG	phrog_5867	endolysin	lysis
UHGV-0058572_57	UniRef90	UniRef90_A0A642A5A4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0058572_57	eggNOG-mapper	1262914.BN533_01740	Peptidoglycan-binding domain 1 protein	NA
UHGV-0058572_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0058572_57	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0058572_57	Structural annotation	MF_04111	NA	NA
UHGV-0058572_63	PHROG	phrog_15551	NA	unknown function
UHGV-0058572_63	UniRef90	UniRef90_A0A3N8CJN0	LPD11 domain-containing protein	NA
UHGV-0058572_63	eggNOG-mapper	1507.HMPREF0262_01055	SNF2 family N-terminal domain	NA
UHGV-0058572_63	Pfam	PF18824	Large polyvalent protein-associated domain 11	LPD11
UHGV-0058572_63	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0058572_63	Structural annotation	PF18824	NA	NA
UHGV-0058572_65	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0058572_65	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0058572_66	Structural annotation	PF04545, NF001069, COG2739	NA	NA