UHGV-0058614

Genome information

Genome length 42,905 bps

CDS count 65

Completeness 91.66% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058614
vOTU ID	vOTU-077852
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_57787
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.49
Jumbo phage	No

Genome content
Genome length	42,905 bps
GC content	45.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.36%
Average CDS length	601.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058614_1	UniRef90	UniRef90_A0A373NXB7	NA	NA
UHGV-0058614_2	UniRef90	UniRef90_A0A412MHW8	Murein L,D-transpeptidase	NA
UHGV-0058614_3	eggNOG-mapper	411474.COPEUT_00699	NA	NA
UHGV-0058614_4	eggNOG-mapper	411474.COPEUT_00694	NA	NA
UHGV-0058614_7	KOfam	K07313	pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]	NA
UHGV-0058614_7	PHROG	phrog_246	NinI-like serine-threonine phosphatase	other
UHGV-0058614_7	UniRef90	UniRef90_A0A174YQ16	Fructose-bisphosphatase class III	NA
UHGV-0058614_7	eggNOG-mapper	1160721.RBI_I01548	Calcineurin-like phosphoesterase	NA
UHGV-0058614_7	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0058614_7	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0058614_7	Structural annotation	PF06874, MF_01443, NF010148, COG2129	NA	NA
UHGV-0058614_8	UniRef90	UniRef90_A0A174ZYX5	WYL domain-containing protein	NA
UHGV-0058614_8	eggNOG-mapper	37659.JNLN01000001_gene129	WYL domain	NA
UHGV-0058614_8	PADLOC	pfam13280	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated_signaling	CRISPR-CAS
UHGV-0058614_8	Pfam	PF13280	WYL domain	WYL
UHGV-0058614_8	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0058614_10	KOfam	K02469	gyrA; DNA gyrase subunit A [EC:5.6.2.2]	NA
UHGV-0058614_10	UniRef90	UniRef90_R7NEQ0	DNA topoisomerase (ATP-hydrolyzing)	NA
UHGV-0058614_10	eggNOG-mapper	1460634.JCM19037_3258	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	NA
UHGV-0058614_10	Pfam	PF00521	DNA gyrase/topoisomerase IV, subunit A	DNA_topoisoIV
UHGV-0058614_10	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0058614_11	PHROG	phrog_9696	tail length tape measure protein	tail
UHGV-0058614_11	UniRef90	UniRef90_A0A1M7SMG0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0058614_11	eggNOG-mapper	411470.RUMGNA_00240	Phage tail tape measure protein, TP901 family	NA
UHGV-0058614_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0058614_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0058614_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0058614_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0058614_12	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0058614_12	UniRef90	UniRef90_UPI001C3ADA24	Phage tail assembly protein	NA
UHGV-0058614_12	eggNOG-mapper	411470.RUMGNA_00238	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0058614_12	Structural annotation	PF10109	NA	NA
UHGV-0058614_13	KOfam	K06908	NA	NA
UHGV-0058614_13	PHROG	phrog_55	head closure	connector
UHGV-0058614_13	UniRef90	UniRef90_A7AY72	Putative phage major tail tube protein	NA
UHGV-0058614_13	eggNOG-mapper	411470.RUMGNA_00237	Phage tail tube protein FII	NA
UHGV-0058614_13	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0058614_13	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0058614_13	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0058614_14	KOfam	K06907	NA	NA
UHGV-0058614_14	PHROG	phrog_23	tail sheath	tail
UHGV-0058614_14	UniRef90	UniRef90_UPI001C3A454F	Phage tail sheath family protein	NA
UHGV-0058614_14	eggNOG-mapper	411470.RUMGNA_00236	COG3497 Phage tail sheath protein FI	NA
UHGV-0058614_14	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0058614_14	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0058614_15	PHROG	phrog_4089	NA	unknown function
UHGV-0058614_15	eggNOG-mapper	411470.RUMGNA_00235	NA	NA
UHGV-0058614_16	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0058614_16	eggNOG-mapper	411470.RUMGNA_00234	NA	NA
UHGV-0058614_16	Structural annotation	PF08873	NA	NA
UHGV-0058614_17	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0058614_17	UniRef90	UniRef90_UPI001C3BDE3A	Phage tail protein	NA
UHGV-0058614_17	eggNOG-mapper	411470.RUMGNA_00233	NA	NA
UHGV-0058614_17	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0058614_17	Structural annotation	PF06763	NA	NA
UHGV-0058614_18	PHROG	phrog_2551	minor tail protein	tail
UHGV-0058614_18	eggNOG-mapper	411470.RUMGNA_00232	ATP-binding sugar transporter from pro-phage	NA
UHGV-0058614_18	Structural annotation	PF05354	NA	NA
UHGV-0058614_19	PHROG	phrog_34087	NA	unknown function
UHGV-0058614_19	eggNOG-mapper	411470.RUMGNA_00231	NA	NA
UHGV-0058614_20	PHROG	phrog_122	head decoration	head and packaging
UHGV-0058614_20	UniRef90	UniRef90_A0A414DFD7	NA	NA
UHGV-0058614_20	eggNOG-mapper	411470.RUMGNA_00230	NA	NA
UHGV-0058614_20	Pfam	PF09956	NA	DUF2190
UHGV-0058614_20	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0058614_20	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0058614_21	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0058614_21	UniRef90	UniRef90_A0A413BFL7	Mu-like_gpT domain-containing protein	NA
UHGV-0058614_21	eggNOG-mapper	411470.RUMGNA_00229	serine-type endopeptidase activity	NA
UHGV-0058614_21	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0058614_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0058614_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0058614_22	KOfam	K06904	NA	NA
UHGV-0058614_22	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0058614_22	UniRef90	UniRef90_A7AY63	Caudovirus prohead protease	NA
UHGV-0058614_22	eggNOG-mapper	411470.RUMGNA_00228	Caudovirus prohead serine protease	NA
UHGV-0058614_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0058614_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0058614_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0058614_23	PHROG	phrog_21	portal protein	head and packaging
UHGV-0058614_23	UniRef90	UniRef90_A7AY62	Phage portal protein, lambda family	NA
UHGV-0058614_23	eggNOG-mapper	411470.RUMGNA_00227	Phage portal protein, lambda family	NA
UHGV-0058614_23	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0058614_23	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0058614_23	COG	COG5511	Phage capsid protein	NA
UHGV-0058614_23	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0058614_24	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0058614_24	UniRef90	UniRef90_A0A316SI17	Peptidylprolyl isomerase	NA
UHGV-0058614_24	eggNOG-mapper	411470.RUMGNA_00226	NA	NA
UHGV-0058614_24	Structural annotation	PF19645	NA	NA
UHGV-0058614_25	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0058614_25	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0058614_25	UniRef90	UniRef90_A0A1Q6KUF0	Terminase	NA
UHGV-0058614_25	eggNOG-mapper	411470.RUMGNA_00225	Phage terminase large subunit (GpA)	NA
UHGV-0058614_25	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0058614_25	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0058614_25	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0058614_25	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0058614_25	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0058614_26	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0058614_26	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0058614_26	UniRef90	UniRef90_A0A414DFJ1	DNA-packaging protein	NA
UHGV-0058614_26	eggNOG-mapper	411470.RUMGNA_00224	NA	NA
UHGV-0058614_26	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0058614_26	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0058614_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0058614_29	UniRef90	UniRef90_A0A1M7LTP3	Sigma-70, region 4	NA
UHGV-0058614_29	eggNOG-mapper	411470.RUMGNA_00221	NA	NA
UHGV-0058614_29	Structural annotation	PF07374, MF_00245, TIGR02984, COG2739	NA	NA
UHGV-0058614_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058614_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058614_32	UniRef90	UniRef90_A7AY53	Single-stranded DNA-binding protein	NA
UHGV-0058614_32	eggNOG-mapper	411470.RUMGNA_00218	NA	NA
UHGV-0058614_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058614_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058614_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058614_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058614_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0058614_34	eggNOG-mapper	411470.RUMGNA_00216	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0058614_34	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0058614_35	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0058614_35	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0058614_35	UniRef90	UniRef90_A0A416UCJ4	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0058614_35	eggNOG-mapper	411470.RUMGNA_00216	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0058614_35	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0058614_35	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0058614_35	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0058614_37	PHROG	phrog_23707	NA	unknown function
UHGV-0058614_37	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0058614_37	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0058614_37	Pfam	PF04448	NA	DUF551
UHGV-0058614_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0058614_38	PHROG	phrog_15982	NA	unknown function
UHGV-0058614_38	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0058614_38	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0058614_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058614_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0058614_38	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0058614_39	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-0058614_39	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0058614_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0058614_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0058614_40	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0058614_40	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0058614_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0058614_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0058614_40	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0058614_41	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0058614_42	PHROG	phrog_824	NA	unknown function
UHGV-0058614_42	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0058614_42	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0058614_42	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0058614_45	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0058614_45	PHROG	phrog_19890	NA	unknown function
UHGV-0058614_45	UniRef90	UniRef90_A0A1Q6KU88	SLT domain-containing protein	NA
UHGV-0058614_45	eggNOG-mapper	411470.RUMGNA_00204	Transglycosylase SLT domain protein	NA
UHGV-0058614_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0058614_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058614_46	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0058614_46	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0058614_46	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0058614_49	PHROG	phrog_31560	NA	unknown function
UHGV-0058614_49	eggNOG-mapper	608534.GCWU000341_01723	NA	NA
UHGV-0058614_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0058614_50	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0058614_50	UniRef90	UniRef90_A0A414DFI8	Cytosine-specific methyltransferase	NA
UHGV-0058614_50	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-0058614_50	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0058614_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0058614_50	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0058614_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0058614_50	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0058614_51	eggNOG-mapper	411470.RUMGNA_00197	NA	NA
UHGV-0058614_52	Structural annotation	PF01375, NF002013, COG3502	NA	NA
UHGV-0058614_53	eggNOG-mapper	411470.RUMGNA_00195	NA	NA
UHGV-0058614_54	PHROG	phrog_17847	NA	unknown function
UHGV-0058614_54	eggNOG-mapper	537007.BLAHAN_04202	NA	NA
UHGV-0058614_54	Pfam	PF18828	Large polyvalent-protein-associated domain 15	LPD15
UHGV-0058614_54	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0058614_57	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0058614_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058614_57	UniRef90	UniRef90_A0A1Q6KU91	Transcriptional regulator	NA
UHGV-0058614_57	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0058614_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058614_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058614_57	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0058614_59	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0058614_59	UniRef90	UniRef90_A0A414DFP4	XRE family transcriptional regulator	NA
UHGV-0058614_59	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0058614_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058614_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0058614_60	UniRef90	UniRef90_A0A414DG25	NINE protein	NA
UHGV-0058614_60	eggNOG-mapper	1378168.N510_03179	SWIM zinc finger	NA
UHGV-0058614_60	Pfam	PF05154	TM2 domain	TM2
UHGV-0058614_60	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0058614_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0058614_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0058614_61	UniRef90	UniRef90_A7AY22	Resolvase, N-terminal domain protein	NA
UHGV-0058614_61	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0058614_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0058614_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0058614_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0058614_61	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0058614_62	KOfam	K11631	bceA, vraD; bacitracin transport system ATP-binding protein	NA
UHGV-0058614_62	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0058614_62	UniRef90	UniRef90_A0A1C6A0S9	Macrolide export ATP-binding/permease protein MacB	NA
UHGV-0058614_62	eggNOG-mapper	1256908.HMPREF0373_00976	NA	NA
UHGV-0058614_62	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0058614_62	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0058614_62	Structural annotation	PF00005, MF_01005, NF008639, COG1136	NA	NA
UHGV-0058614_63	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0058614_63	UniRef90	UniRef90_A0A373YZZ5	XRE family transcriptional regulator	NA
UHGV-0058614_63	eggNOG-mapper	1256908.HMPREF0373_02049	sequence-specific DNA binding	NA
UHGV-0058614_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058614_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0058614_65	UniRef90	UniRef90_A5ZA01	DDE_Tnp_1 domain-containing protein	NA
UHGV-0058614_65	eggNOG-mapper	411463.EUBVEN_02548	Transposase	NA
UHGV-0058614_65	COG	COG3385	IS4 transposase InsG	NA