UHGV-0058632

Genome information

Genome length 41,385 bps

CDS count 64

Completeness 94.50% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058632
vOTU ID	vOTU-067569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_55772
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.82
Jumbo phage	No

Genome content
Genome length	41,385 bps
GC content	54.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.42%
Average CDS length	588.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058632_4	PHROG	phrog_20016	NA	unknown function
UHGV-0058632_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0058632_4	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0058632_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0058632_5	PHROG	phrog_16490	NA	unknown function
UHGV-0058632_5	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0058632_6	PHROG	phrog_22984	NA	unknown function
UHGV-0058632_7	PHROG	phrog_21718	NA	unknown function
UHGV-0058632_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0058632_8	PHROG	phrog_3754	NA	unknown function
UHGV-0058632_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0058632_10	Structural annotation	PF10013, COG4338	NA	NA
UHGV-0058632_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0058632_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058632_11	UniRef90	UniRef90_A0A1Y4S422	Transcriptional regulator	NA
UHGV-0058632_11	eggNOG-mapper	411483.FAEPRAA2165_00535	Helix-turn-helix domain	NA
UHGV-0058632_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0058632_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058632_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0058632_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0058632_12	eggNOG-mapper	1394176.AWUO01000014_gene642	NA	NA
UHGV-0058632_13	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0058632_13	Structural annotation	PF21694, TIGR02985	NA	NA
UHGV-0058632_14	PHROG	phrog_962	holin	lysis
UHGV-0058632_14	UniRef90	UniRef90_A0A1W2A7S4	Holin, phage phi LC3 family	NA
UHGV-0058632_14	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0058632_14	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0058632_14	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0058632_14	COG	COG5546	NA	NA
UHGV-0058632_14	Structural annotation	PF04531	NA	NA
UHGV-0058632_15	PHROG	phrog_37604	NA	unknown function
UHGV-0058632_15	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0058632_16	UniRef90	UniRef90_A0A2V2FP98	SH3b domain-containing protein	NA
UHGV-0058632_16	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0058632_16	COG	COG3103	NA	NA
UHGV-0058632_16	Structural annotation	PF08239, PF00877, NF008096, COG4991, COG0791	NA	NA
UHGV-0058632_19	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0058632_19	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0058632_19	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0058632_19	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0058632_19	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0058632_19	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0058632_20	PHROG	phrog_918	NA	unknown function
UHGV-0058632_20	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0058632_20	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0058632_20	Pfam	PF19791	NA	DUF6275
UHGV-0058632_20	Structural annotation	PF19791	NA	NA
UHGV-0058632_21	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0058632_21	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0058632_22	UniRef90	UniRef90_A0A0K9N6E9	Putative ATPase	NA
UHGV-0058632_22	eggNOG-mapper	397291.C804_01137	NA	NA
UHGV-0058632_23	PHROG	phrog_19280	NA	unknown function
UHGV-0058632_23	Structural annotation	PF10651, NF032891, COG5513	NA	NA
UHGV-0058632_24	Structural annotation	PF09931	NA	NA
UHGV-0058632_26	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0058632_26	eggNOG-mapper	1111134.HMPREF1253_0370	NA	NA
UHGV-0058632_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0058632_26	COG	COG4926	Phage-related protein	NA
UHGV-0058632_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0058632_27	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0058632_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0058632_28	UniRef90	UniRef90_G5K3Q9	Tail protein	NA
UHGV-0058632_28	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0058632_28	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0058632_30	PHROG	phrog_18646	NA	unknown function
UHGV-0058632_30	eggNOG-mapper	1121936.AUHI01000017_gene750	NA	NA
UHGV-0058632_31	PHROG	phrog_885	major tail protein	tail
UHGV-0058632_31	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0058632_31	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-0058632_31	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0058632_32	PHROG	phrog_17405	head protein	head and packaging
UHGV-0058632_32	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0058632_32	Structural annotation	PF11367	NA	NA
UHGV-0058632_33	PHROG	phrog_17977	NA	unknown function
UHGV-0058632_33	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0058632_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0058632_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0058632_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0058632_35	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0058632_35	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0058632_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0058632_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0058632_36	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0058632_36	Structural annotation	PF06810	NA	NA
UHGV-0058632_38	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0058632_38	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0058632_38	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0058632_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0058632_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0058632_38	COG	COG2369	NA	NA
UHGV-0058632_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0058632_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0058632_39	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0058632_39	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0058632_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0058632_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0058632_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058632_40	PHROG	phrog_10250	NA	unknown function
UHGV-0058632_40	UniRef90	UniRef90_UPI0002EF417D	PBSX family phage terminase large subunit	NA
UHGV-0058632_40	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0058632_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058632_40	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0058632_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0058632_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058632_40	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058632_41	PHROG	phrog_2412	NA	unknown function
UHGV-0058632_42	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0058632_43	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0058632_44	Structural annotation	TIGR03655	NA	NA
UHGV-0058632_45	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0058632_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0058632_45	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-0058632_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0058632_45	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0058632_45	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0058632_45	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0058632_46	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0058632_46	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0058632_46	Structural annotation	PF12261, MF_02210, NF040502, COG1247	NA	NA
UHGV-0058632_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0058632_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0058632_48	UniRef90	UniRef90_UPI0009EAC172	DNA cytosine methyltransferase	NA
UHGV-0058632_48	eggNOG-mapper	445972.ANACOL_03332	C-5 cytosine-specific DNA methylase	NA
UHGV-0058632_48	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0058632_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0058632_48	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0058632_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0058632_48	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0058632_49	KOfam	K25500	mazZ; dATP/dGTP diphosphohydrolase [EC:3.6.1.-]	NA
UHGV-0058632_49	UniRef90	UniRef90_UPI00054386A4	nucleotide pyrophosphohydrolase	NA
UHGV-0058632_49	Pfam	PF12643	MazG-like family	MazG-like
UHGV-0058632_49	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0058632_49	Structural annotation	COG1694	NA	NA
UHGV-0058632_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058632_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058632_50	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-0058632_50	eggNOG-mapper	1321781.HMPREF1985_01487	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0058632_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058632_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058632_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058632_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058632_50	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0058632_51	PHROG	phrog_824	NA	unknown function
UHGV-0058632_51	UniRef90	UniRef90_A0A645FWL0	VRR-NUC domain-containing protein	NA
UHGV-0058632_51	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0058632_51	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0058632_52	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0058632_52	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0058632_52	UniRef90	UniRef90_A0A2D5NHA5	Replicative DNA helicase	NA
UHGV-0058632_52	eggNOG-mapper	1321786.HMPREF1992_01477	Participates in initiation and elongation during chromosome replication	NA
UHGV-0058632_52	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0058632_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0058632_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-0058632_52	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0058632_53	Pfam	PF19808	NA	DUF6291
UHGV-0058632_53	Structural annotation	PF19808	NA	NA
UHGV-0058632_55	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0058632_55	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058632_55	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0058632_55	eggNOG-mapper	1158602.I590_02957	RecT family	NA
UHGV-0058632_55	Pfam	PF03837	RecT family	RecT
UHGV-0058632_55	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0058632_55	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0058632_55	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0058632_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058632_56	UniRef90	UniRef90_A0A7C6PS99	Endonuclease	NA
UHGV-0058632_56	eggNOG-mapper	997296.PB1_16439	YqaJ-like viral recombinase domain	NA
UHGV-0058632_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0058632_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0058632_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0058632_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0058632_59	Structural annotation	PF20432, MF_00535, NF040507, COG1396	NA	NA
UHGV-0058632_60	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0058632_60	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0058632_60	UniRef90	UniRef90_A0A3M1YWL0	XRE family transcriptional regulator	NA
UHGV-0058632_60	eggNOG-mapper	1121931.AUHG01000003_gene900	NA	NA
UHGV-0058632_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058632_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058632_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0058632_61	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0058632_61	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0058632_64	KOfam	K14059	int; integrase	NA
UHGV-0058632_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0058632_64	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-0058632_64	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0058632_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0058632_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058632_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058632_64	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA