UHGV-0058663

Genome information

Genome length 29,646 bps

CDS count 44

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058663
vOTU ID	vOTU-045023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_53630
BioSample	SAMEA2159338
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.52
Jumbo phage	No

Genome content
Genome length	29,646 bps
GC content	57.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.28%
Average CDS length	624.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058663_2	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0058663_2	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0058663_2	UniRef90	UniRef90_A0A2A6Z7T9	MBL fold metallo-hydrolase	NA
UHGV-0058663_2	eggNOG-mapper	537013.CLOSTMETH_01716	Metallo-beta-lactamase superfamily	NA
UHGV-0058663_2	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0058663_2	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0058663_2	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0058663_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0058663_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058663_3	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0058663_3	eggNOG-mapper	1033744.CAEL01000029_gene1294	RecT family	NA
UHGV-0058663_3	Pfam	PF03837	RecT family	RecT
UHGV-0058663_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0058663_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0058663_3	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0058663_4	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0058663_4	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058663_4	UniRef90	UniRef90_A0A2A6Z7T4	AAA_15 domain-containing protein	NA
UHGV-0058663_4	eggNOG-mapper	537013.CLOSTMETH_01714	nuclear chromosome segregation	NA
UHGV-0058663_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0058663_4	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0058663_6	Structural annotation	PF19607	NA	NA
UHGV-0058663_8	UniRef90	UniRef90_UPI00117C9CA9	helix-turn-helix domain-containing protein	NA
UHGV-0058663_8	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0058663_8	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0058663_9	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0058663_9	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0058663_9	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0058663_10	PHROG	phrog_750	NA	unknown function
UHGV-0058663_10	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0058663_10	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0058663_13	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0058663_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058663_13	UniRef90	UniRef90_R9K5V7	HTH cro/C1-type domain-containing protein	NA
UHGV-0058663_13	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0058663_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0058663_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058663_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0058663_14	UniRef90	UniRef90_N1Z2V2	Integrase_SAM-like_N domain-containing protein	NA
UHGV-0058663_14	eggNOG-mapper	1291050.JAGE01000002_gene3375	Belongs to the 'phage' integrase family	NA
UHGV-0058663_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0058663_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0058663_15	PHROG	phrog_291	endolysin	lysis
UHGV-0058663_15	UniRef90	UniRef90_UPI001E09FBEF	peptidoglycan-binding protein	NA
UHGV-0058663_15	eggNOG-mapper	877414.ATWA01000004_gene545	Glycosyl hydrolases family 25	NA
UHGV-0058663_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0058663_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0058663_15	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0058663_15	Structural annotation	PF01183, MF_00691, TIGR02869, NF003814, COG3757	NA	NA
UHGV-0058663_16	PHROG	phrog_199	holin	lysis
UHGV-0058663_16	UniRef90	UniRef90_UPI0009888550	phage holin family protein	NA
UHGV-0058663_16	eggNOG-mapper	1298920.KI911353_gene4833	Bacteriophage holin family	NA
UHGV-0058663_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0058663_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0058663_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0058663_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0058663_21	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0058663_21	UniRef90	UniRef90_A0A3A6DL62	Phage tail tape measure protein	NA
UHGV-0058663_21	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0058663_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0058663_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0058663_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0058663_22	PHROG	phrog_706	NA	unknown function
UHGV-0058663_22	UniRef90	UniRef90_UPI0006828F20	Gp15 family bacteriophage protein	NA
UHGV-0058663_22	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0058663_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0058663_22	Structural annotation	PF06854	NA	NA
UHGV-0058663_24	PHROG	phrog_820	major tail protein	tail
UHGV-0058663_24	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0058663_24	eggNOG-mapper	411471.SUBVAR_06988	NA	NA
UHGV-0058663_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0058663_25	PHROG	phrog_3266	tail completion	connector
UHGV-0058663_25	UniRef90	UniRef90_UPI000F637EFF	chloramphenicol resistance protein	NA
UHGV-0058663_25	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0058663_25	Structural annotation	PF12691	NA	NA
UHGV-0058663_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0058663_26	UniRef90	UniRef90_UPI001C10177D	minor capsid protein	NA
UHGV-0058663_26	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0058663_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0058663_26	Structural annotation	PF11114	NA	NA
UHGV-0058663_27	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0058663_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0058663_29	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0058663_29	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0058663_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0058663_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0058663_30	UniRef90	UniRef90_UPI00177F4161	phage scaffolding protein	NA
UHGV-0058663_30	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-0058663_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0058663_30	Structural annotation	PF06810	NA	NA
UHGV-0058663_31	Structural annotation	PF11344	NA	NA
UHGV-0058663_32	UniRef90	UniRef90_UPI001CEC2B18	minor capsid protein	NA
UHGV-0058663_32	eggNOG-mapper	888060.HMPREF9081_1553	cell adhesion	NA
UHGV-0058663_32	COG	COG2369	NA	NA
UHGV-0058663_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0058663_33	UniRef90	UniRef90_A0A417EY47	Minor capsid protein	NA
UHGV-0058663_33	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0058663_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0058663_33	COG	COG2369	NA	NA
UHGV-0058663_33	Structural annotation	PF06152	NA	NA
UHGV-0058663_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0058663_34	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0058663_34	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0058663_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0058663_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058663_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0058663_35	UniRef90	UniRef90_UPI0019684892	phage terminase large subunit	NA
UHGV-0058663_35	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0058663_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058663_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0058663_35	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058663_36	PHROG	phrog_2412	NA	unknown function
UHGV-0058663_36	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0058663_37	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0058663_37	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0058663_39	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0058663_39	eggNOG-mapper	155864.EDL933_0960	helix-turn-helix	NA
UHGV-0058663_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058663_39	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0058663_39	Structural annotation	PF13560, NF007257, COG1476	NA	NA
UHGV-0058663_41	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058663_41	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0058663_41	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0058663_41	Pfam	PF06356	NA	DUF1064
UHGV-0058663_41	Structural annotation	PF06356	NA	NA
UHGV-0058663_42	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0058663_42	UniRef90	UniRef90_A0A2A6Z7R8	DnaB_2 domain-containing protein	NA
UHGV-0058663_42	eggNOG-mapper	697284.ERIC2_c10590	Replication initiation and membrane attachment	NA
UHGV-0058663_42	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0058663_42	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0058663_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0058663_42	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0058663_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058663_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058663_43	UniRef90	UniRef90_A0A316PSZ3	Single-stranded DNA-binding protein	NA
UHGV-0058663_43	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0058663_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058663_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058663_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058663_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058663_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA