UHGV-0058715

Genome information

Genome length 42,872 bps

CDS count 61

Completeness 77.00% (medium-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058715
vOTU ID	vOTU-015736
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_48769
BioSample	SAMEA2149241
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.06
Jumbo phage	No

Genome content
Genome length	42,872 bps
GC content	46.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.85%
Average CDS length	640.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058715_1	PHROG	phrog_15037	NA	unknown function
UHGV-0058715_1	UniRef90	UniRef90_A0A7U3RL93	Holin (Fragment)	NA
UHGV-0058715_1	eggNOG-mapper	411476.BACOVA_03950	NA	NA
UHGV-0058715_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0058715_3	PHROG	phrog_1699	long tail fiber protein distal subunit	tail
UHGV-0058715_3	eggNOG-mapper	46681.XP_001740814.1	Chaperone of endosialidase	NA
UHGV-0058715_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0058715_4	eggNOG-mapper	435591.BDI_0884	Head fiber protein	NA
UHGV-0058715_4	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0058715_6	PHROG	phrog_24616	NA	unknown function
UHGV-0058715_6	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0058715_6	Structural annotation	PF20459	NA	NA
UHGV-0058715_7	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0058715_7	eggNOG-mapper	357276.EL88_08355	NA	NA
UHGV-0058715_7	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0058715_8	PHROG	phrog_37138	NA	unknown function
UHGV-0058715_8	UniRef90	UniRef90_A0A3D6EB93	BIG2 domain-containing protein	NA
UHGV-0058715_8	eggNOG-mapper	1236514.BAKL01000015_gene1623	NA	NA
UHGV-0058715_8	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0058715_9	PHROG	phrog_21217	NA	unknown function
UHGV-0058715_9	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0058715_10	PHROG	phrog_38780	NA	unknown function
UHGV-0058715_10	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0058715_10	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-0058715_10	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0058715_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0058715_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0058715_11	UniRef90	UniRef90_A0A3D6E908	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0058715_11	eggNOG-mapper	1347393.HG726026_gene2525	Clp protease	NA
UHGV-0058715_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0058715_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0058715_11	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0058715_12	PHROG	phrog_17790	NA	unknown function
UHGV-0058715_12	UniRef90	UniRef90_A0A3N2MW96	Mor domain-containing protein	NA
UHGV-0058715_12	eggNOG-mapper	435590.BVU_0954	NA	NA
UHGV-0058715_14	PHROG	phrog_33698	NA	unknown function
UHGV-0058715_14	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-0058715_14	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0058715_15	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0058715_15	PHROG	phrog_37298	NA	unknown function
UHGV-0058715_15	UniRef90	UniRef90_A0A3D6EBN7	PhageMin_Tail domain-containing protein	NA
UHGV-0058715_15	eggNOG-mapper	762984.HMPREF9445_00173	domain protein	NA
UHGV-0058715_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0058715_15	COG	COG1511	NA	NA
UHGV-0058715_15	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0058715_16	PHROG	phrog_37065	NA	unknown function
UHGV-0058715_16	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0058715_16	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0058715_17	PHROG	phrog_31246	NA	unknown function
UHGV-0058715_17	eggNOG-mapper	1122931.AUAE01000005_gene3263	NA	NA
UHGV-0058715_18	PHROG	phrog_33245	NA	unknown function
UHGV-0058715_18	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0058715_18	eggNOG-mapper	357276.EL88_08405	NA	NA
UHGV-0058715_18	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0058715_19	PHROG	phrog_28240	NA	unknown function
UHGV-0058715_19	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0058715_19	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0058715_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0058715_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0058715_20	UniRef90	UniRef90_A0A3D6E9M8	Phage portal protein	NA
UHGV-0058715_20	eggNOG-mapper	357276.EL88_08415	Phage terminase large subunit	NA
UHGV-0058715_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0058715_20	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058715_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0058715_21	UniRef90	UniRef90_A0A6N2UJJ1	Transposase	NA
UHGV-0058715_21	eggNOG-mapper	357276.EL88_12710	Helix-turn-helix of insertion element transposase	NA
UHGV-0058715_21	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0058715_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0058715_21	Structural annotation	PF07141	NA	NA
UHGV-0058715_22	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0058715_22	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0058715_22	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0058715_22	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0058715_23	PHROG	phrog_17622	NA	unknown function
UHGV-0058715_23	UniRef90	UniRef90_A0A4Z0V2T9	ParB domain-containing protein	NA
UHGV-0058715_23	eggNOG-mapper	435590.BVU_2842	ParB-like nuclease domain	NA
UHGV-0058715_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058715_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0058715_23	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0058715_26	Structural annotation	PF16670	NA	NA
UHGV-0058715_28	PHROG	phrog_874	NA	unknown function
UHGV-0058715_28	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0058715_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0058715_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0058715_29	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0058715_29	UniRef90	UniRef90_A0A3D6EAT5	Methyltransferase	NA
UHGV-0058715_29	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0058715_29	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0058715_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0058715_29	COG	COG0863	DNA modification methylase	NA
UHGV-0058715_29	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0058715_32	PHROG	phrog_28300	NA	unknown function
UHGV-0058715_34	PHROG	phrog_98	NA	unknown function
UHGV-0058715_34	UniRef90	UniRef90_A0A1Q6FH80	YopX domain-containing protein	NA
UHGV-0058715_34	eggNOG-mapper	435591.BDI_0866	YopX protein	NA
UHGV-0058715_34	Pfam	PF09643	YopX protein	YopX
UHGV-0058715_35	PHROG	phrog_32914	NA	unknown function
UHGV-0058715_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0058715_37	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0058715_37	UniRef90	UniRef90_UPI00164AD922	site-specific DNA-methyltransferase	NA
UHGV-0058715_37	eggNOG-mapper	1347393.HG726021_gene365	DNA methylase	NA
UHGV-0058715_37	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0058715_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0058715_37	COG	COG0863	DNA modification methylase	NA
UHGV-0058715_37	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0058715_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0058715_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0058715_38	UniRef90	UniRef90_A0A396F778	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0058715_38	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0058715_38	PADLOC	SspD_00001	SspD	SSP
UHGV-0058715_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0058715_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0058715_38	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0058715_39	PHROG	phrog_15768	NA	unknown function
UHGV-0058715_39	UniRef90	UniRef90_G5SMF9	NA	NA
UHGV-0058715_39	eggNOG-mapper	762968.HMPREF9441_00534	NA	NA
UHGV-0058715_39	Pfam	PF19808	NA	DUF6291
UHGV-0058715_41	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058715_41	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0058715_41	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0058715_43	PHROG	phrog_19572	NA	unknown function
UHGV-0058715_43	UniRef90	UniRef90_A0A5M5M9N2	NA	NA
UHGV-0058715_43	eggNOG-mapper	763034.HMPREF9446_00684	COG NOG14445 non supervised orthologous group	NA
UHGV-0058715_43	Pfam	PF14902	NA	DUF4494
UHGV-0058715_43	Structural annotation	PF14902	NA	NA
UHGV-0058715_45	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058715_45	UniRef90	UniRef90_A0A6N9NNA0	NA	NA
UHGV-0058715_45	eggNOG-mapper	873513.HMPREF6485_0131	NA	NA
UHGV-0058715_45	Pfam	PF11325	NA	DUF3127
UHGV-0058715_45	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0058715_46	eggNOG-mapper	435591.BDI_0854	NA	NA
UHGV-0058715_46	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0058715_48	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058715_48	UniRef90	UniRef90_A0A5S5D227	ERF superfamily protein	NA
UHGV-0058715_48	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0058715_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0058715_48	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0058715_52	UniRef90	UniRef90_A0A5P1RE49	Helix-turn-helix domain-containing protein	NA
UHGV-0058715_52	eggNOG-mapper	28229.ND2E_0069	Excisionase	NA
UHGV-0058715_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0058715_52	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0058715_52	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0058715_52	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0058715_53	PHROG	phrog_16858	NA	unknown function
UHGV-0058715_53	Structural annotation	PF08587	NA	NA
UHGV-0058715_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0058715_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0058715_54	UniRef90	UniRef90_A0A828VI74	Tyr recombinase domain-containing protein	NA
UHGV-0058715_54	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0058715_54	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0058715_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0058715_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0058715_54	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0058715_55	UniRef90	UniRef90_R5YYX0	HTH cro/C1-type domain-containing protein	NA
UHGV-0058715_55	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0058715_60	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-0058715_60	eggNOG-mapper	411901.BACCAC_01107	NA	NA
UHGV-0058715_61	PHROG	phrog_38431	NA	unknown function
UHGV-0058715_61	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0058715_61	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA