UHGV-0058754

Genome information

Genome length 23,011 bps

CDS count 38

Completeness 50.11% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058754
vOTU ID	vOTU-040257
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52259
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.96
Jumbo phage	No

Genome content
Genome length	23,011 bps
GC content	48.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.94%
Average CDS length	549.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058754_1	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0058754_1	UniRef90	UniRef90_UPI00189DB5D1	DNA polymerase elongation subunit (family B)	NA
UHGV-0058754_1	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0058754_1	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0058754_1	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0058754_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0058754_2	UniRef90	UniRef90_UPI0018774E0E	reductase	NA
UHGV-0058754_2	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0058754_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0058754_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058754_4	UniRef90	UniRef90_UPI001A9A8367	ERF family protein	NA
UHGV-0058754_4	eggNOG-mapper	936572.HMPREF1148_0677	ERF superfamily	NA
UHGV-0058754_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0058754_4	Structural annotation	PF04404	NA	NA
UHGV-0058754_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058754_5	UniRef90	UniRef90_H1CES3	YqaJ domain-containing protein	NA
UHGV-0058754_5	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0058754_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0058754_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0058754_5	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0058754_6	AcrCatalog	cluster_73853	NA	NA
UHGV-0058754_8	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0058754_9	PHROG	phrog_1485	NA	unknown function
UHGV-0058754_9	UniRef90	UniRef90_H1CES0	NA	NA
UHGV-0058754_9	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0058754_9	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0058754_10	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0058754_10	UniRef90	UniRef90_UPI001AB02E43	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0058754_10	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0058754_10	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0058754_10	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0058754_10	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0058754_11	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0058754_11	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0058754_11	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0058754_11	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0058754_11	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0058754_11	Structural annotation	PF21447, MF_01427, NF010007, COG3481	NA	NA
UHGV-0058754_12	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0058754_12	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0058754_12	UniRef90	UniRef90_UPI001898977C	FAD-dependent thymidylate synthase	NA
UHGV-0058754_12	eggNOG-mapper	1336241.JAEB01000001_gene147	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0058754_12	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0058754_12	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0058754_12	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0058754_12	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0058754_15	PHROG	phrog_30550	NA	unknown function
UHGV-0058754_15	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-0058754_15	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0058754_15	Structural annotation	TIGR02869	NA	NA
UHGV-0058754_16	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0058754_16	UniRef90	UniRef90_H1CER3	PriCT_1 domain-containing protein	NA
UHGV-0058754_16	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0058754_16	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0058754_16	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0058754_17	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0058754_17	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0058754_17	UniRef90	UniRef90_UPI001D0750B0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0058754_17	eggNOG-mapper	553973.CLOHYLEM_03974	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0058754_17	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0058754_17	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0058754_17	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0058754_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0058754_19	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0058754_19	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-0058754_19	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0058754_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0058754_19	Pfam	PF19263	NA	DUF5906
UHGV-0058754_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0058754_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0058754_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0058754_19	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0058754_20	PHROG	phrog_22389	NA	unknown function
UHGV-0058754_20	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0058754_23	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0058754_25	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0058754_25	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0058754_25	eggNOG-mapper	1235802.C823_05975	NA	NA
UHGV-0058754_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0058754_25	Structural annotation	PF16677	NA	NA
UHGV-0058754_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058754_29	eggNOG-mapper	1378168.N510_00538	NA	NA
UHGV-0058754_30	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0058754_31	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0058754_31	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0058754_31	UniRef90	UniRef90_UPI001C023A41	recombinase family protein	NA
UHGV-0058754_31	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0058754_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0058754_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0058754_31	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0058754_32	Structural annotation	PF19190, MF_00791, NF003967, COG2967	NA	NA
UHGV-0058754_33	PHROG	phrog_1233	NA	unknown function
UHGV-0058754_33	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0058754_33	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0058754_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0058754_34	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0058754_34	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0058754_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0058754_34	COG	COG5410	NA	NA
UHGV-0058754_34	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0058754_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0058754_35	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0058754_35	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0058754_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0058754_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0058754_38	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0058754_38	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0058754_38	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0058754_38	Pfam	PF17236	NA	DUF5309
UHGV-0058754_38	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA