UHGV-0058918

Genome information

Genome length 12,300 bps

CDS count 15

Completeness 90.18% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058918
vOTU ID	vOTU-066483
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_103334
BioSample	SAMEA2467002
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.1
Jumbo phage	No

Genome content
Genome length	12,300 bps
GC content	36.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	94.18%
Average CDS length	783.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058918_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0058918_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0058918_5	UniRef90	UniRef90_A0A316S5V3	DNA-directed DNA polymerase	NA
UHGV-0058918_5	eggNOG-mapper	338473.A6XAD2_9CAUD	nucleotide binding	NA
UHGV-0058918_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0058918_5	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0058918_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0058918_6	UniRef90	UniRef90_A0A843GEL8	Phage DNA encapsidation protein	NA
UHGV-0058918_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0058918_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0058918_7	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0058918_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0058918_10	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0058918_10	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0058918_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0058918_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0058918_11	Structural annotation	PF20934	NA	NA
UHGV-0058918_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0058918_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0058918_15	PHROG	phrog_291	endolysin	lysis
UHGV-0058918_15	UniRef90	UniRef90_A0A3R6JQ14	1,4-beta-N-acetylmuramidase	NA
UHGV-0058918_15	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0058918_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0058918_15	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0058918_15	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0058918_15	Structural annotation	PF01183, NF011432, COG3757	NA	NA