UHGV-0058919

Genome information

Genome length 41,423 bps

CDS count 77

Completeness 99.91% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0058919
vOTU ID	vOTU-013786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_103339
BioSample	SAMEA2467002
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.19
Jumbo phage	No

Genome content
Genome length	41,423 bps
GC content	51.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	90.94%
Average CDS length	495.08 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0058919_1	KOfam	K04088	hflK; modulator of FtsH protease HflK	NA
UHGV-0058919_1	UniRef90	UniRef90_A0A354WP92	Peptidase	NA
UHGV-0058919_1	eggNOG-mapper	1105031.HMPREF1141_2114	SPFH domain Band 7 family	NA
UHGV-0058919_1	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0058919_1	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0058919_2	UniRef90	UniRef90_R5EBQ9	NA	NA
UHGV-0058919_2	eggNOG-mapper	1469948.JPNB01000001_gene1021	NA	NA
UHGV-0058919_2	Pfam	PF20037	NA	DUF6440
UHGV-0058919_3	PHROG	phrog_20274	NA	unknown function
UHGV-0058919_3	UniRef90	UniRef90_UPI001C119248	putative ABC transporter permease	NA
UHGV-0058919_3	eggNOG-mapper	608534.GCWU000341_02273	NA	NA
UHGV-0058919_3	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0058919_3	COG	COG4905	NA	NA
UHGV-0058919_3	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0058919_5	Structural annotation	PF12510	NA	NA
UHGV-0058919_6	PHROG	phrog_20016	NA	unknown function
UHGV-0058919_6	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0058919_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0058919_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0058919_7	PHROG	phrog_16490	NA	unknown function
UHGV-0058919_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0058919_8	PHROG	phrog_22984	NA	unknown function
UHGV-0058919_9	PHROG	phrog_21718	NA	unknown function
UHGV-0058919_9	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0058919_10	PHROG	phrog_3754	NA	unknown function
UHGV-0058919_10	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0058919_11	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0058919_12	PHROG	phrog_10091	holin	lysis
UHGV-0058919_12	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0058919_12	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0058919_12	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0058919_12	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0058919_12	COG	COG5546	NA	NA
UHGV-0058919_12	Structural annotation	COG5546	NA	NA
UHGV-0058919_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0058919_13	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0058919_13	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0058919_13	Pfam	PF14359	NA	DUF4406
UHGV-0058919_13	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0058919_14	PHROG	phrog_937	hemolysin	other
UHGV-0058919_14	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0058919_15	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0058919_15	PHROG	phrog_894	endolysin	lysis
UHGV-0058919_15	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0058919_15	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0058919_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0058919_15	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0058919_15	COG	COG3108	NA	NA
UHGV-0058919_15	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0058919_19	PHROG	phrog_2295	NA	unknown function
UHGV-0058919_19	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0058919_19	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-0058919_20	PHROG	phrog_9534	head protein	head and packaging
UHGV-0058919_20	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0058919_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0058919_21	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0058919_21	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0058919_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0058919_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0058919_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0058919_22	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0058919_22	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0058919_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0058919_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0058919_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0058919_23	eggNOG-mapper	1203602.HMPREF1527_01082	Phage tail tape measure protein TP901	NA
UHGV-0058919_23	COG	COG5412	Phage-related protein	NA
UHGV-0058919_23	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0058919_25	PHROG	phrog_18646	NA	unknown function
UHGV-0058919_25	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0058919_26	PHROG	phrog_885	major tail protein	tail
UHGV-0058919_26	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0058919_26	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0058919_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0058919_27	Structural annotation	PF11367	NA	NA
UHGV-0058919_28	PHROG	phrog_17977	NA	unknown function
UHGV-0058919_28	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0058919_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0058919_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0058919_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0058919_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0058919_30	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0058919_30	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0058919_31	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0058919_31	Structural annotation	PF06810	NA	NA
UHGV-0058919_32	PHROG	phrog_1233	NA	unknown function
UHGV-0058919_32	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0058919_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0058919_33	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0058919_33	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0058919_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0058919_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0058919_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0058919_34	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0058919_35	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0058919_35	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0058919_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0058919_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0058919_35	COG	COG2369	NA	NA
UHGV-0058919_35	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0058919_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0058919_36	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0058919_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0058919_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0058919_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0058919_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0058919_37	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0058919_37	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0058919_37	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0058919_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0058919_39	PHROG	phrog_21498	NA	unknown function
UHGV-0058919_39	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0058919_39	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0058919_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0058919_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0058919_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0058919_39	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0058919_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0058919_40	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0058919_40	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0058919_40	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0058919_42	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0058919_47	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0058919_48	PHROG	phrog_924	NA	unknown function
UHGV-0058919_48	UniRef90	UniRef90_A0A2D5MY84	NA	NA
UHGV-0058919_48	Pfam	PF04448	NA	DUF551
UHGV-0058919_48	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0058919_50	PHROG	phrog_3136	NA	unknown function
UHGV-0058919_50	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0058919_50	Pfam	PF04266	ASCH domain	ASCH
UHGV-0058919_50	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0058919_50	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0058919_51	PHROG	phrog_6083	DNA methylase	DNA, RNA and nucleotide metabolism
UHGV-0058919_51	UniRef90	UniRef90_C9L4C0	Prophage L54a, N-6-adenine-methyltransferase family protein	NA
UHGV-0058919_51	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0058919_51	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0058919_51	Structural annotation	PF05869	NA	NA
UHGV-0058919_52	PHROG	phrog_22740	NA	unknown function
UHGV-0058919_52	UniRef90	UniRef90_A0A2V2F8D8	Adenine methyltransferase	NA
UHGV-0058919_52	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0058919_52	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0058919_52	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0058919_53	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0058919_53	UniRef90	UniRef90_UPI00189BA758	DNA cytosine methyltransferase	NA
UHGV-0058919_53	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0058919_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0058919_53	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0058919_54	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0058919_56	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0058919_56	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0058919_56	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0058919_56	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0058919_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0058919_56	Structural annotation	PF14297	NA	NA
UHGV-0058919_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0058919_57	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0058919_57	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0058919_57	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0058919_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0058919_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0058919_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0058919_58	PHROG	phrog_28936	NA	unknown function
UHGV-0058919_58	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0058919_58	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0058919_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0058919_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0058919_59	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0058919_59	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0058919_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0058919_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0058919_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0058919_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0058919_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0058919_60	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0058919_60	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0058919_60	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0058919_60	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0058919_60	Pfam	PF03837	RecT family	RecT
UHGV-0058919_60	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0058919_60	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0058919_60	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0058919_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0058919_61	UniRef90	UniRef90_A0A354AUE1	YqaJ domain-containing protein	NA
UHGV-0058919_61	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0058919_61	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0058919_61	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0058919_61	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0058919_61	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0058919_65	PHROG	phrog_1029	NA	unknown function
UHGV-0058919_65	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0058919_65	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0058919_66	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0058919_66	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0058919_66	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0058919_69	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0058919_70	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0058919_72	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0058919_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058919_72	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0058919_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0058919_73	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0058919_73	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0058919_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0058919_73	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0058919_74	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0058919_77	UniRef90	UniRef90_A0A373NUR9	Zinc ribbon domain-containing protein	NA
UHGV-0058919_77	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0058919_77	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2