UHGV-0059211

Genome information

Genome length 45,553 bps

CDS count 65

Completeness 71.37% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059211
vOTU ID	vOTU-016666
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_94929
BioSample	SAMEA2466890
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.54
Jumbo phage	No

Genome content
Genome length	45,553 bps
GC content	39.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.23%
Average CDS length	634.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059211_1	UniRef90	UniRef90_A0A8D9PFD0	Leucine rich repeat protein (Fragment)	NA
UHGV-0059211_2	eggNOG-mapper	272559.BF9343_2321	NA	NA
UHGV-0059211_3	PHROG	phrog_19572	NA	unknown function
UHGV-0059211_3	UniRef90	UniRef90_A0A3E5G5E8	NA	NA
UHGV-0059211_3	eggNOG-mapper	411479.BACUNI_04366	COG NOG14445 non supervised orthologous group	NA
UHGV-0059211_3	Pfam	PF14902	NA	DUF4494
UHGV-0059211_3	Structural annotation	PF14902	NA	NA
UHGV-0059211_5	UniRef90	UniRef90_UPI001C3FA356	helix-turn-helix domain-containing protein	NA
UHGV-0059211_5	eggNOG-mapper	1121100.JCM6294_512	NA	NA
UHGV-0059211_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0059211_7	eggNOG-mapper	657309.BXY_05630	NA	NA
UHGV-0059211_8	PHROG	phrog_5783	NA	unknown function
UHGV-0059211_8	UniRef90	UniRef90_A0A1Y4V5H4	Helicase	NA
UHGV-0059211_8	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0059211_8	Pfam	PF01936	NYN domain	NYN
UHGV-0059211_8	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0059211_8	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0059211_9	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0059211_9	eggNOG-mapper	762968.HMPREF9441_00550	NA	NA
UHGV-0059211_10	PHROG	phrog_38431	NA	unknown function
UHGV-0059211_10	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0059211_10	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0059211_11	PHROG	phrog_34053	NA	unknown function
UHGV-0059211_12	PHROG	phrog_28898	NA	unknown function
UHGV-0059211_12	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0059211_12	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0059211_12	Structural annotation	PF10781	NA	NA
UHGV-0059211_13	PHROG	phrog_26448	NA	unknown function
UHGV-0059211_13	eggNOG-mapper	411901.BACCAC_01114	NA	NA
UHGV-0059211_13	Pfam	PF20647	NA	DUF6808
UHGV-0059211_13	Structural annotation	PF20647	NA	NA
UHGV-0059211_15	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0059211_15	UniRef90	UniRef90_UPI001E50E70D	SGNH/GDSL hydrolase family protein	NA
UHGV-0059211_15	eggNOG-mapper	411901.BACCAC_01116	Calcineurin-like phosphoesterase	NA
UHGV-0059211_15	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-0059211_17	Structural annotation	PF17994, NF038128	NA	NA
UHGV-0059211_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059211_18	PHROG	phrog_822	amidase	lysis
UHGV-0059211_18	UniRef90	UniRef90_UPI001C375BE4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059211_18	eggNOG-mapper	657309.BXY_05110	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059211_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0059211_18	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0059211_19	Structural annotation	PF10043, NF008028, COG5652	NA	NA
UHGV-0059211_22	UniRef90	UniRef90_UPI00189CD2F4	phage holin family protein	NA
UHGV-0059211_22	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0059211_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0059211_22	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0059211_23	UniRef90	UniRef90_A0A372UZ63	Glycosyl transferase	NA
UHGV-0059211_23	eggNOG-mapper	411901.BACCAC_01122	NA	NA
UHGV-0059211_24	UniRef90	UniRef90_A0A372UWS1	NA	NA
UHGV-0059211_24	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0059211_24	Pfam	PF14301	NA	DUF4376
UHGV-0059211_24	Structural annotation	PF14301	NA	NA
UHGV-0059211_25	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0059211_25	Structural annotation	NF012201	NA	NA
UHGV-0059211_27	UniRef90	UniRef90_A5ZE15	BACON domain-containing protein	NA
UHGV-0059211_27	eggNOG-mapper	411901.BACCAC_01126	Putative binding domain, N-terminal	NA
UHGV-0059211_27	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-0059211_27	Structural annotation	PF19190, NF011836, COG5492	NA	NA
UHGV-0059211_29	Structural annotation	PF17789, COG3470	NA	NA
UHGV-0059211_30	eggNOG-mapper	411901.BACCAC_01129	NA	NA
UHGV-0059211_31	PHROG	phrog_22546	NA	unknown function
UHGV-0059211_31	UniRef90	UniRef90_A0A412I9C3	Collagen-like protein	NA
UHGV-0059211_31	eggNOG-mapper	411901.BACCAC_00720	chlorophyll binding	NA
UHGV-0059211_31	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0059211_32	eggNOG-mapper	1122971.BAME01000119_gene6179	NA	NA
UHGV-0059211_33	PHROG	phrog_26568	NA	unknown function
UHGV-0059211_33	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-0059211_33	Structural annotation	PF02927, PF19266	NA	NA
UHGV-0059211_34	PHROG	phrog_22157	NA	unknown function
UHGV-0059211_34	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-0059211_34	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0059211_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0059211_36	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0059211_36	UniRef90	UniRef90_UPI0018AB6665	antA/AntB antirepressor family protein	NA
UHGV-0059211_36	eggNOG-mapper	1347393.HG726024_gene2894	AntA/AntB antirepressor	NA
UHGV-0059211_36	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0059211_36	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0059211_36	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0059211_37	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0059211_37	PHROG	phrog_26705	NA	unknown function
UHGV-0059211_37	UniRef90	UniRef90_UPI001C8B8FEE	phage tail tape measure protein	NA
UHGV-0059211_37	eggNOG-mapper	411476.BACOVA_03936	Phage-related minor tail protein	NA
UHGV-0059211_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0059211_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0059211_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0059211_39	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0059211_39	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0059211_39	UniRef90	UniRef90_A0A642MCS1	Helix-turn-helix transcriptional regulator	NA
UHGV-0059211_39	eggNOG-mapper	762968.HMPREF9441_02258	DNA-binding helix-turn-helix protein	NA
UHGV-0059211_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0059211_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059211_39	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0059211_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0059211_40	PHROG	phrog_2523	NA	unknown function
UHGV-0059211_40	UniRef90	UniRef90_A0A642MCQ6	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0059211_40	eggNOG-mapper	1268240.ATFI01000008_gene2302	NA	NA
UHGV-0059211_40	Pfam	PF05973	NA	Gp49
UHGV-0059211_40	COG	COG4683	NA	NA
UHGV-0059211_40	Structural annotation	PF05973, TIGR02385, COG4679	NA	NA
UHGV-0059211_41	eggNOG-mapper	1450525.JATV01000002_gene1955	NA	NA
UHGV-0059211_42	eggNOG-mapper	1158294.JOMI01000003_gene2279	NA	NA
UHGV-0059211_42	Structural annotation	PF05862	NA	NA
UHGV-0059211_44	PHROG	phrog_23063	NA	unknown function
UHGV-0059211_44	eggNOG-mapper	1122931.AUAE01000005_gene3485	NA	NA
UHGV-0059211_44	Pfam	PF20482	NA	DUF6722
UHGV-0059211_44	Structural annotation	PF20482	NA	NA
UHGV-0059211_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0059211_45	UniRef90	UniRef90_UPI001C8B510C	phage antirepressor KilAC domain-containing protein	NA
UHGV-0059211_45	eggNOG-mapper	679190.HMPREF0650_0366	KilA-N domain	NA
UHGV-0059211_45	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0059211_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0059211_45	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0059211_45	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0059211_47	eggNOG-mapper	1268240.ATFI01000007_gene438	NA	NA
UHGV-0059211_47	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-0059211_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0059211_49	UniRef90	UniRef90_UPI001C8CCC3C	phage antirepressor KilAC domain-containing protein	NA
UHGV-0059211_49	eggNOG-mapper	396034.A6XMM0_9CAUD	DNA binding	NA
UHGV-0059211_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0059211_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0059211_51	PHROG	phrog_26299	NA	unknown function
UHGV-0059211_51	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0059211_52	PHROG	phrog_6195	tail protein	tail
UHGV-0059211_52	UniRef90	UniRef90_UPI001C3FEA83	ABC transporter	NA
UHGV-0059211_52	eggNOG-mapper	449673.BACSTE_00574	NA	NA
UHGV-0059211_53	PHROG	phrog_25857	NA	unknown function
UHGV-0059211_54	PHROG	phrog_24272	NA	unknown function
UHGV-0059211_54	eggNOG-mapper	449673.BACSTE_00576	NA	NA
UHGV-0059211_54	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0059211_55	PHROG	phrog_23418	NA	unknown function
UHGV-0059211_55	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0059211_55	Structural annotation	PF08873	NA	NA
UHGV-0059211_56	PHROG	phrog_26639	NA	unknown function
UHGV-0059211_56	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0059211_56	Structural annotation	PF20459	NA	NA
UHGV-0059211_58	PHROG	phrog_10	major head protein	head and packaging
UHGV-0059211_58	UniRef90	UniRef90_UPI001F18753E	phage major capsid protein	NA
UHGV-0059211_58	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0059211_58	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0059211_58	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0059211_58	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0059211_58	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0059211_59	KOfam	K06904	NA	NA
UHGV-0059211_59	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0059211_59	UniRef90	UniRef90_UPI0012316551	HK97 family phage prohead protease	NA
UHGV-0059211_59	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0059211_59	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0059211_59	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0059211_59	COG	COG3740	Phage head maturation protease	NA
UHGV-0059211_59	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0059211_60	PHROG	phrog_12	portal protein	head and packaging
UHGV-0059211_60	UniRef90	UniRef90_UPI001C3F90E1	phage portal protein	NA
UHGV-0059211_60	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0059211_60	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0059211_60	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0059211_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059211_61	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0059211_61	UniRef90	UniRef90_UPI001C3F82F0	PBSX family phage terminase large subunit	NA
UHGV-0059211_61	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-0059211_61	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0059211_61	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059211_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059211_61	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0059211_62	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0059211_62	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0059211_62	UniRef90	UniRef90_UPI001C8C037B	terminase small subunit	NA
UHGV-0059211_62	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-0059211_62	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0059211_62	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0059211_62	Structural annotation	PF03592, COG3728	NA	NA