UHGV-0059389

Genome information

Genome length 36,925 bps

CDS count 65

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059389
vOTU ID	vOTU-045030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_98455
BioSample	SAMEA2467080
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.45
Jumbo phage	No

Genome content
Genome length	36,925 bps
GC content	58.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.22%
Average CDS length	526.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059389_2	Structural annotation	PF05082	NA	NA
UHGV-0059389_3	Structural annotation	NF041247	NA	NA
UHGV-0059389_5	Structural annotation	PF10548	NA	NA
UHGV-0059389_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0059389_8	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0059389_8	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0059389_8	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0059389_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059389_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0059389_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0059389_10	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0059389_10	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0059389_10	UniRef90	UniRef90_UPI001897CA3A	exonuclease	NA
UHGV-0059389_10	eggNOG-mapper	1437608.BBIA_1844	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0059389_10	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0059389_10	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0059389_10	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0059389_10	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0059389_10	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0059389_10	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0059389_11	PHROG	phrog_10292	NA	unknown function
UHGV-0059389_11	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-0059389_11	eggNOG-mapper	1033810.HLPCO_001631	TM2 domain	NA
UHGV-0059389_11	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0059389_11	Pfam	PF05154	TM2 domain	TM2
UHGV-0059389_11	COG	COG2314	NA	NA
UHGV-0059389_12	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0059389_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059389_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059389_12	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0059389_13	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0059389_13	PHROG	phrog_95	integrase	integration and excision
UHGV-0059389_13	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0059389_13	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0059389_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0059389_13	Pfam	PF07508	Recombinase	Recombinase
UHGV-0059389_13	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0059389_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0059389_13	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0059389_14	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0059389_14	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0059389_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059389_18	PHROG	phrog_1794	amidase	lysis
UHGV-0059389_18	UniRef90	UniRef90_UPI001570B791	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059389_18	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-0059389_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0059389_18	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0059389_18	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0059389_19	PHROG	phrog_443	holin	lysis
UHGV-0059389_19	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-0059389_19	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0059389_19	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0059389_19	Structural annotation	PF16945	NA	NA
UHGV-0059389_20	PHROG	phrog_937	hemolysin	other
UHGV-0059389_22	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0059389_22	Structural annotation	PF10618	NA	NA
UHGV-0059389_24	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0059389_24	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0059389_24	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0059389_24	Pfam	PF19789	NA	DUF6273
UHGV-0059389_24	Structural annotation	PF19789	NA	NA
UHGV-0059389_25	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0059389_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0059389_26	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0059389_27	PHROG	phrog_10898	NA	unknown function
UHGV-0059389_27	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0059389_27	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0059389_27	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0059389_27	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0059389_29	Structural annotation	PF10651	NA	NA
UHGV-0059389_30	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0059389_31	PHROG	phrog_26795	NA	unknown function
UHGV-0059389_31	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0059389_31	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0059389_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0059389_32	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0059389_32	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0059389_32	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0059389_32	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0059389_33	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0059389_33	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0059389_33	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0059389_33	COG	COG5283	Phage-related tail protein	NA
UHGV-0059389_33	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0059389_34	Structural annotation	PF11836	NA	NA
UHGV-0059389_35	PHROG	phrog_88	major tail protein	tail
UHGV-0059389_35	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0059389_35	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0059389_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0059389_35	COG	COG5492	NA	NA
UHGV-0059389_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0059389_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0059389_36	Structural annotation	TIGR01725	NA	NA
UHGV-0059389_37	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0059389_37	Structural annotation	PF05657	NA	NA
UHGV-0059389_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0059389_38	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0059389_38	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0059389_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0059389_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0059389_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0059389_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0059389_39	PHROG	phrog_5223	neck protein	connector
UHGV-0059389_39	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-0059389_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0059389_40	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0059389_40	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0059389_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0059389_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0059389_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0059389_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0059389_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0059389_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0059389_41	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0059389_41	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0059389_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0059389_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0059389_41	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0059389_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0059389_42	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0059389_42	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0059389_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0059389_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0059389_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0059389_43	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0059389_43	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0059389_43	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0059389_43	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0059389_43	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0059389_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0059389_43	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0059389_44	PHROG	phrog_1066	NA	unknown function
UHGV-0059389_44	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0059389_44	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0059389_45	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059389_45	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0059389_45	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0059389_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0059389_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0059389_46	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0059389_46	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0059389_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0059389_47	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0059389_47	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0059389_48	PHROG	phrog_21498	NA	unknown function
UHGV-0059389_48	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0059389_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0059389_48	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0059389_53	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059389_53	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-0059389_55	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0059389_55	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-0059389_55	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0059389_55	Pfam	PF06356	NA	DUF1064
UHGV-0059389_55	Structural annotation	PF06356	NA	NA
UHGV-0059389_59	PHROG	phrog_38832	NA	unknown function
UHGV-0059389_59	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0059389_60	PHROG	phrog_3136	NA	unknown function
UHGV-0059389_60	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0059389_60	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0059389_60	Pfam	PF04266	ASCH domain	ASCH
UHGV-0059389_60	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0059389_60	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0059389_62	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0059389_62	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0059389_62	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0059389_62	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0059389_62	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0059389_63	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059389_63	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059389_63	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0059389_63	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0059389_63	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059389_63	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059389_63	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA