UHGV-0059408

Genome information

Genome length 26,507 bps

CDS count 36

Completeness 58.90% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059408
vOTU ID	vOTU-036589
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_75803
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.56
Jumbo phage	No

Genome content
Genome length	26,507 bps
GC content	42.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.79%
Average CDS length	685.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059408_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0059408_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0059408_1	UniRef90	UniRef90_A0A417A9G0	Reverse transcriptase domain-containing protein	NA
UHGV-0059408_1	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0059408_1	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0059408_1	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0059408_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0059408_1	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0059408_3	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0059408_3	Structural annotation	PF14600	NA	NA
UHGV-0059408_4	PHROG	phrog_443	holin	lysis
UHGV-0059408_4	UniRef90	UniRef90_UPI0008F89B51	holin	NA
UHGV-0059408_4	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0059408_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0059408_4	Structural annotation	PF16945	NA	NA
UHGV-0059408_5	Structural annotation	PF08207	NA	NA
UHGV-0059408_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0059408_6	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0059408_6	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0059408_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0059408_6	COG	COG2369	NA	NA
UHGV-0059408_6	Structural annotation	PF06152	NA	NA
UHGV-0059408_7	PHROG	phrog_3754	NA	unknown function
UHGV-0059408_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0059408_8	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0059408_8	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0059408_9	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0059408_9	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0059408_10	PHROG	phrog_21718	NA	unknown function
UHGV-0059408_10	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0059408_11	PHROG	phrog_22984	NA	unknown function
UHGV-0059408_12	PHROG	phrog_16490	NA	unknown function
UHGV-0059408_12	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0059408_13	PHROG	phrog_20016	NA	unknown function
UHGV-0059408_13	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0059408_13	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0059408_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0059408_14	PHROG	phrog_28802	NA	unknown function
UHGV-0059408_14	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0059408_15	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-0059408_15	eggNOG-mapper	272563.CD630_05081	Cysteine-rich KTR	NA
UHGV-0059408_15	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0059408_15	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0059408_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0059408_16	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0059408_16	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0059408_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0059408_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0059408_17	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0059408_17	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0059408_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0059408_18	eggNOG-mapper	476272.RUMHYD_01777	NA	NA
UHGV-0059408_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0059408_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0059408_20	PHROG	phrog_918	NA	unknown function
UHGV-0059408_20	UniRef90	UniRef90_UPI000494EEFE	NA	NA
UHGV-0059408_20	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0059408_20	Pfam	PF19791	NA	DUF6275
UHGV-0059408_20	Structural annotation	PF19791	NA	NA
UHGV-0059408_21	PHROG	phrog_3366	NA	unknown function
UHGV-0059408_21	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0059408_21	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0059408_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0059408_22	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0059408_22	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0059408_22	Structural annotation	PF11114	NA	NA
UHGV-0059408_23	PHROG	phrog_3266	tail completion	connector
UHGV-0059408_23	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0059408_23	Structural annotation	PF12691	NA	NA
UHGV-0059408_24	PHROG	phrog_3099	NA	unknown function
UHGV-0059408_24	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0059408_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0059408_25	PHROG	phrog_11299	NA	unknown function
UHGV-0059408_25	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0059408_25	Structural annotation	PF10666	NA	NA
UHGV-0059408_26	PHROG	phrog_706	NA	unknown function
UHGV-0059408_26	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0059408_26	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0059408_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0059408_26	Structural annotation	PF06854	NA	NA
UHGV-0059408_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0059408_27	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0059408_27	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0059408_27	COG	COG5412	Phage-related protein	NA
UHGV-0059408_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0059408_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0059408_29	PHROG	phrog_6616	tail protein	tail
UHGV-0059408_29	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0059408_29	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0059408_29	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0059408_31	PHROG	phrog_4105	NA	unknown function
UHGV-0059408_31	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0059408_32	PHROG	phrog_18218	NA	unknown function
UHGV-0059408_32	UniRef90	UniRef90_UPI001C0EBFB3	ribonuclease	NA
UHGV-0059408_32	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0059408_32	Structural annotation	PF06946	NA	NA
UHGV-0059408_33	PHROG	phrog_9589	endolysin	lysis
UHGV-0059408_33	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0059408_33	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0059408_33	Pfam	PF05257	CHAP domain	CHAP
UHGV-0059408_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0059408_33	COG	COG3942	Surface antigen	NA
UHGV-0059408_33	Structural annotation	PF01471, PF01374, COG3409	NA	NA
UHGV-0059408_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0059408_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0059408_34	UniRef90	UniRef90_A0A2Z4UD85	Bro-N domain-containing protein	NA
UHGV-0059408_34	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0059408_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0059408_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0059408_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0059408_34	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0059408_35	KOfam	K14059	int; integrase	NA
UHGV-0059408_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0059408_35	UniRef90	UniRef90_UPI00156E983E	site-specific integrase	NA
UHGV-0059408_35	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0059408_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059408_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0059408_35	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA